Browse Element(s) Details


Os.10382.1.S1_at

Description gb:AK062003.1
DB_XREF= gi:32972021
TID=Os.10382.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10382 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013048O08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D07, full insert sequence.
FL= gb:AK065897.1 gb:AK062003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0797411/11Tesmin/TSO1-like CXC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07950Os.23227.1.S1_at11/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07950Os.23612.1.S1_at2/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07960NANA7+4002845..4003279hypothetical protein
LOC_Os07g07974Os.10382.1.S1_at11/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.2.S1_at11/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S2_x_at5/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S1_x_at4/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S1_at4/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.50851.1.S1_at1/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.19069.1.S2_x_at1/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07990Os.8859.1.S1_s_at11/117+4027661..4029140Leucine Rich Repeat family protein, expressed
LOC_Os07g08000Os.27092.1.S1_at11/117+4048081..4052823Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009934biological_processregulation of meristem organization
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10382.1.S1_at--1082--8071Chr07:4025050..4025074 (25 bp)
GGAGCTGTTCACTCACAGAAGTTCT
LOC_Os07g07974
Os.10382.1.S1_at--885--631Chr07:4025129..4025153 (25 bp)
ATGCTTCTCCTGGTAACTGTGTCAA
LOC_Os07g07974
Os.10382.1.S1_at--941--8831Chr07:4025237..4025261 (25 bp)
TGATACTGAAATCCATCCCCTCATT
LOC_Os07g07974
Os.10382.1.S1_at--1068--191Chr07:4025259..4025283 (25 bp)
ATTTCCATCACTCATTGGAGACGCA
LOC_Os07g07974
Os.10382.1.S1_at--606--5491Chr07:4025301..4025325 (25 bp)
GAACAGTTCCGAGAGCGCATTCAAC
LOC_Os07g07974
Os.10382.1.S1_at--386--4971Chr07:4025329..4025349 (21 bp)
GCATCGCCTCTTGCTTTAGGTCCAT
LOC_Os07g07974
Os.10382.1.S1_at--964--1031Chr07:4025436..4025460 (25 bp)
AGGTCCATCCTAAAAGCTGGCTGCT
LOC_Os07g07974
Os.10382.1.S1_at--6--1631Chr07:4025450..4025474 (25 bp)
AGCTGGCTGCTGATTATGAGCGTCC
LOC_Os07g07974
Os.10382.1.S1_at--138--10131Chr07:4025464..4025488 (25 bp)
TATGAGCGTCCGGAGTACAACTTGT
LOC_Os07g07974
Os.10382.1.S1_at--412--2731Chr07:4025515..4025539 (25 bp)
AAGCACGGCATCAGGTACTGGATGA
LOC_Os07g07974
Os.10382.1.S1_at--109--391Chr07:4025678..4025702 (25 bp)
ATCACCTCTGTGGAGGTTTTTCAAC
LOC_Os07g07974
Target Sequence 
GGAGCTGTTCACTCACAGAAGTTCTCCAAGATTGCTAATAGTGGCTTGAATGAAGAAATGCCAGATATATTAAGAGATGA
TGCTTCTCCTGGTAACTGTGTCAAGACATCTTCACCAAATGGAAAGAGAGTCTCGCCNCCTCATAATGCACTCAGTGTTT
CNCCAANCCGAAAAGGTGGCCGGAAGCTGATACTGAAATCCATCCCCTCATTTCCATCACTCATTGGAGACGCAAGCAGC
GGTTCATCAATGAACAGTTCCGAGAGCGCATTCAACACTGCATCGCCTCTTGCTTTAGGTCCATCCTAAAAGCTGGCTGC
TGATTATGAGCGTCCGGAGTACAACTTGTAGTCCGAGAAAAGTNCCTCNCATNTGAAGCACGGCATCAGGTACTGGATGA
GGGTAGTTTAAGTTAGAATATTAAGATCTTGTAGCATGTATTTGTAACATATGTTAGTGGCAAATAATCTGTATGTAAGA
TAGTATGTTGTGATGATGATAATGTTGTCTTGATTGAATTCTATCAACACTGTATAAAATCACCTCTGTGGAGGTTTTTC
AAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis