Browse Element(s) Details


Os.10402.1.S1_x_at

Description gb:AK070303.1
DB_XREF= gi:32980327
TID=Os.10402.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10402 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048O17, full insert sequence.
FL= gb:AK070303.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7072011/11expressed protein
LOC_Os11g078606/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70670Os.18167.1.A1_at10/111+41242189..41247610BTB/POZ domain containing protein, expressed
LOC_Os01g70680Os.32389.2.S1_at11/111+41248727..41249320Gamma-thionins family protein, expressed
LOC_Os01g70690OsAffx.8287.1.S1_x_at1/111+41250567..41250902Rapid ALkalinization Factor family protein
LOC_Os01g70700OsAffx.28769.1.S1_s_at11/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.28769.3.S1_at7/111+41253053..41256206hypothetical protein
LOC_Os01g70700OsAffx.2336.1.S1_at2/111+41253053..41256206hypothetical protein
LOC_Os01g70710NANA1+41257342..41259258heavy metal-associated domain containing protein, expressed
LOC_Os01g70720Os.38191.2.S1_at11/111+41265313..41267845expressed protein
LOC_Os01g70720Os.10402.1.S1_x_at11/111+41265313..41267845expressed protein
LOC_Os01g70730Os.28450.1.S1_at10/111+41269394..41269818flowering promoting factor-like 1, putative, expressed
LOC_Os01g70740Os.21222.1.S1_s_at11/111+41273921..41276388expressed protein
LOC_Os01g70740Os.21222.1.S1_at10/111+41273921..41276388expressed protein
LOC_Os01g70740Os.6534.1.A1_at1/111+41273921..41276388expressed protein
LOC_Os01g70750Os.56332.1.S1_at1/111+41279715..41282588hypothetical protein
LOC_Os01g70760OsAffx.22699.1.S1_x_at2/111+41283204..41286511retrotransposon protein, putative, unclassified
LOC_Os01g70770Os.4698.1.S1_at11/111+41289312..41291089Glutathione S-transferase III, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10402.1.S1_x_at--594--4813Chr11:4012105..4012129 (25 bp)
GCTCTGCTGAGGGATTCTTTATTTT
LOC_Os11g07860
Os.10402.1.S1_x_at--1041--1473Chr11:4012569..4012593 (25 bp)
AGAATTCAGGCTCTATTTCTGCTCC
LOC_Os11g07860
Os.10402.1.S1_x_at--640--1893Chr11:4012675..4012699 (25 bp)
ACGTTTTTGGACTTGTGATGCTTCT
LOC_Os11g07860
Os.10402.1.S1_x_at--256--6273Chr11:4012691..4012715 (25 bp)
GATGCTTCTGGTGAGGTTTTTGGAC
LOC_Os11g07860
Os.10402.1.S1_x_at--470--8513Chr11:4012711..4012735 (25 bp)
TGGACTAGACCAACCAATAGCATTT
LOC_Os11g07860
Os.10402.1.S1_x_at--318--6633Chr11:4012741..4012765 (25 bp)
GTTGGGCTCGGTGAGATCATTACAA
LOC_Os11g07860
Os.10402.1.S1_x_at--1054--713Chr11:4012865..4012889 (25 bp)
ATGATTCACTGTGGTGCTGATGCAA
NONE
Os.10402.1.S1_x_at--524--5173Chr11:4012886..4012910 (25 bp)
GCAAGTCAGCATTGGTAGTCTTTGA
NONE
Os.10402.1.S1_x_at--995--2653Chr11:4012943..4012967 (25 bp)
AAGCCATGCTGATTTAAACTGATAT
NONE
Os.10402.1.S1_x_at--283--2393Chr11:4013078..4013102 (25 bp)
AAACGTGTTGTGGTGAGCTATGGCA
NONE
Os.10402.1.S1_x_at--220--8233Chr11:4013099..4013123 (25 bp)
GGCACAAAATCCTCTTTCCATGAAT
NONE
Target Sequence 
GCTCTGCTGAGGGATTCTTTATTTTAGTACAGTAGAGAACTGAGATCAGTGCAAATCGAGAATTCAGGCTCTATTTCTGC
TCCTTAACATCAGAATTGAAGTTATGTGGCAGATTGTGTTAGAACAAAAACCTTCAGAGAAGCTCAACATTTACTAATAG
GAGTACGTTTTTGGACTTGTGATGCTTCTGGTGAGGTTTTTGGACTAGACCAACCAATAGCATTTAGGTTGTTGGGCTCG
GTGAGATCATTACAAGCACTTGAAGGTGTGGCTAAGTAATTGGATGATTCACTGTGGTGCTGATGCAAGTCAGCATTGGT
AGTCTTTGAAGATGCAGAATGAACTCTACTAATTTAGGGCTAAGCCATGCTGATTTAAACTGATATATATTTAGTGCTCC
TATAGCAATTGGTGAAGAAATTGTGTGGAAGTTTCTGTTAAAATGATGAAATTAAGAACATGTTTGGTAATATATAAATA
CTATAGATTGGATCTGAAACGTGTTGTGGTGAGCTATGGCACAAAATCCTCTTTCCATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10402.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis