Browse Element(s) Details


Os.10427.1.S1_a_at

Description gb:BI805459
DB_XREF= gi:15852663
DB_XREF=S038F03
CLONE=S038F03
TID=Os.10427.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10427 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_564570.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g042602/11saccharopine dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04220OsAffx.18661.1.S1_at11/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220OsAffx.18661.2.S1_x_at8/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220OsAffx.24652.1.S1_x_at1/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220Os.38273.1.S1_at1/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04230OsAffx.18662.1.S1_at11/1112+1789093..1790190hypothetical protein
LOC_Os12g04240Os.10842.1.S1_at11/1112+1793279..1796384EF hand family protein, expressed
LOC_Os12g04240Os.10842.1.S1_x_at11/1112+1793279..1796384EF hand family protein, expressed
LOC_Os12g04250NANA12+1798483..1799978retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04260Os.26862.1.S1_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.3.S1_a_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.1.S1_s_at8/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.10427.1.S1_a_at2/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04270Os.5332.1.S1_at10/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04270Os.24981.1.A1_at1/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04280OsAffx.19484.1.S1_at11/1112+1812870..1814809hypothetical protein
LOC_Os12g04290Os.26409.1.S1_a_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.2.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.3.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04300OsAffx.31574.1.S1_at9/1112+1821392..1822197Sulfotransferase domain containing protein
LOC_Os12g04310OsAffx.19542.3.S1_x_at10/1112+1823634..1827469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g04320OsAffx.31574.2.S1_at11/1112+1829961..1830974Sulfotransferase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10427.1.S1_a_at--1054--5232Chr12:1804874..1804898 (25 bp)
GAATACTATTGGATTATTTTCTCAT
LOC_Os12g04260
Os.10427.1.S1_a_at--406--8551Chr12:1804883..1804907 (25 bp)
TGGATTATTTTCTCATAGAAAGCTA
LOC_Os12g04260
Os.10427.1.S1_a_at--804--10011NONE
TAGAAAGCTATCTGTATCGGTGGGC
NONE
Os.10427.1.S1_a_at--306--2351NONE
AAAGCTATCTGTATCGGTGGGCTAT
NONE
Os.10427.1.S1_a_at--279--1571NONE
AGCTATCTGTATCGGTGGGCTATGC
NONE
Os.10427.1.S1_a_at--709--7611Chr12:1806195..1806219 (25 bp)
GGGAATAGTATGTTTCCCTCACTAT
NONE
Os.10427.1.S1_a_at--829--1191Chr12:1806201..1806225 (25 bp)
AGTATGTTTCCCTCACTATATGTCT
NONE
Os.10427.1.S1_a_at--127--10131Chr12:1806203..1806227 (25 bp)
TATGTTTCCCTCACTATATGTCTAT
NONE
Os.10427.1.S1_a_at--673--8771Chr12:1806205..1806229 (25 bp)
TGTTTCCCTCACTATATGTCTATAT
NONE
Os.10427.1.S1_a_at--651--10651Chr12:1806208..1806232 (25 bp)
TTCCCTCACTATATGTCTATATTGA
NONE
Os.10427.1.S1_a_at--417--272Chr12:1806218..1806242 (25 bp)
ATATGTCTATATTGAAGTTTACAGC
NONE
Target Sequence 
GAATACTATTGGATTATTTTCTCATAGAAAGCTATCTGTATCGGTGGGCTATGCAACANCANGCANTTGTTTTANCANTT
CTTGAGGNCAGCACACAGCCTGGCGTATGGTTTCCANGAGGAGCCAGAGGGAGTANCAATTGAATCAAGGAAGGTGCTTC
TTGANCGGGCGTCTNCAAGGAACANACGATCTTCGNTGATGAACAAGCCTTCCTGGATGATAGAGACTGATCCNAAGGAA
GTTGGCCTGGGAATATATGTGTAGGGGAATAGTATGTTTCCCTCACTATATGTCTATATTGAAGTTTACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10427.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis