Browse Element(s) Details


Os.10460.1.S1_at

Description gb:AK062339.1
DB_XREF= gi:32972357
TID=Os.10460.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C97953(C0187),D15162(C0187A)~unknown protein (P0453E03.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-E10, full insert sequence.
FL= gb:AK062339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4671011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46680OsAffx.28871.1.S1_at1/117+27898684..27899599hypothetical protein
LOC_Os07g46690Os.27554.1.S1_x_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46690OsAffx.5653.1.S1_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46700Os.25027.1.S1_a_at11/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_x_at10/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.25027.3.S1_at8/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46700Os.11734.1.S1_a_at1/117+27913627..27919498RNA-binding protein, putative, expressed
LOC_Os07g46710Os.10460.1.S1_at11/117+27920549..27922918expressed protein
LOC_Os07g46720Os.12575.2.S1_at11/117+27924479..27928960Nucleolar protein Nop56, putative, expressed
LOC_Os07g46730Os.12575.1.S1_at11/117+27927822..27931075expressed protein
LOC_Os07g46740OsAffx.28933.1.S1_x_at2/117+27934989..27935563hypothetical protein
LOC_Os07g46740OsAffx.19886.1.S1_at1/117+27934989..27935563hypothetical protein
LOC_Os07g46750Os.138.1.S1_at11/117+27940062..27942618EF-1 guanine nucleotide exchange domain containing protein, expressed
LOC_Os07g46760Os.27317.1.S1_at11/117+27943484..27946410TBP-binding protein, putative, expressed
LOC_Os07g46770Os.31724.1.S1_at11/117+27947234..27948959pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10460.1.S1_at--616--3291Chr07:27921735..27921756 (22 bp)
CAAAGATGGCCTGACGAGTGGTTCA
LOC_Os07g46710
Os.10460.1.S1_at--1115--1851Chr07:27921521..27921545 (25 bp)
ACGAGAAGCTCCAGTACCGTATCAC
LOC_Os07g46710
Os.10460.1.S1_at--565--6491Chr07:27921461..27921485 (25 bp)
GATAGAGAGCCCTACCAAGCTGGAC
LOC_Os07g46710
Os.10460.1.S1_at--397--6431Chr07:27921399..27921423 (25 bp)
GATCTTGTGGTTTTGTGGACTGCGT
LOC_Os07g46710
Os.10460.1.S1_at--1059--7411Chr07:27921376..27921400 (25 bp)
GTGTTCTTAGCACCATCCATGAATT
LOC_Os07g46710
Os.10460.1.S1_at--155--2531Chr07:27921344..27921368 (25 bp)
AACTATTCTAGCGATCTTGATGGGT
LOC_Os07g46710
Os.10460.1.S1_at--776--7491Chr07:27921075..27921099 (25 bp)
GTGGGTGTGTGATTGCTCCGACAAC
LOC_Os07g46710
Os.10460.1.S1_at--700--4791Chr07:27921061..27921085 (25 bp)
GCTCCGACAACTTTCATGCCAGAAG
LOC_Os07g46710
Os.10460.1.S1_at--124--2311Chr07:27920719..27920743 (25 bp)
AAATGGCACCAAATTCGACAGCGAA
LOC_Os07g46710
Os.10460.1.S1_at--447--1671Chr07:27920677..27920701 (25 bp)
AGCCTCACTCGTTTCCTTGTTAGTT
LOC_Os07g46710
Os.10460.1.S1_at--878--3611Chr07:27920662..27920686 (25 bp)
CTTGTTAGTTTATCATCCACGGTTT
LOC_Os07g46710
Target Sequence 
CAAAGATGGCCTGACGAGTGGTTCAGAGACAAATTCATCAGCCGTGAAAGATCTTCAGTCAAAGCTTGATGCAGTTAACA
CAGAATGTCTTGCTGAAAAGGAAAAGAACAAGAAGCTAATCATAGAGAACGAGAAGCTCCAGTACCGTATCACCCATCTC
ATCCGCGCATTGAAAGAGGCAGATTCAAGATAGAGAGCCCTACCAAGCTGGACCTAAAGCTAAATTTGTTTAAATTGAAG
CACTGTGTATGATCTTGTGGTTTTGTGGACTGCGTGTTCTTAGCACCATCCATGAATTTAGCCAAAACTATTCTAGCGAT
CTTGATGGGTATGGTTAAAGCAAGGTGGGTGTGTGATTGCTCCGACAACTTTCATGCCAGAAGACAAAAAAGGTTAATCA
CACAAAATGGCACCAAATTCGACAGCGAAAGGAGCTGGGTAAGGGGAGCCTCACTCGTTTCCTTGTTAGTTTATCATCCA
CGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis