Browse Element(s) Details


Os.10474.1.S1_s_at

Description gb:AU077577
DB_XREF= gi:5667335
DB_XREF=AU077577
CLONE=C2784_2Z
TID=Os.10474.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10474 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564668.1 (A.thaliana) early nodule-specific protein, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3327011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33210OsAffx.27136.1.S1_at11/115+19393642..19395101Ubiquinol-cytochrome c reductase complex 8.0 kDa protein, putative
LOC_Os05g33220Os.47979.1.A1_s_at11/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33220Os.47979.1.A1_at10/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33220Os.27995.1.A1_at5/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33230Os.53333.1.S1_at11/115+19399724..19405264Cobalt transport protein, expressed
LOC_Os05g33240Os.9722.1.S1_at11/115+19405242..19407444DNA-directed RNA polymerase II 19 kDa polypeptide, putative, expressed
LOC_Os05g33260Os.27259.1.S1_at10/115+19407534..19414457expressed protein
LOC_Os05g33270Os.10474.1.S1_s_at11/115+19419990..19424042GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g33280Os.5229.1.S1_at11/115+19424390..19425948expressed protein
LOC_Os05g33290OsAffx.14935.1.S1_at10/115+19426854..19431019expressed protein
LOC_Os05g33300Os.27608.1.A1_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_s_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300OsAffx.14936.1.S1_at9/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_at7/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33310Os.12714.1.S1_at1/115+19442499..19445837oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os05g33320OsAffx.14937.1.S1_at10/115+19448044..19450049expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10474.1.S1_s_at--950--531Chr05:19423016..19423040 (25 bp)
ATCCCAGCTGGATGAACTTCGTTGT
LOC_Os05g33270
Os.10474.1.S1_s_at--950--9851Chr05:19423078..19423102 (25 bp)
TACAGCTGCATGCACTTTGCACAAA
LOC_Os05g33270
Os.10474.1.S1_s_at--761--3131Chr05:19423176..19423660 (25 bp)
AATTATTCGCGCTATGGGTTCGAGA
LOC_Os05g33270
Os.10474.1.S1_s_at--111--7671Chr05:19423651..19423675 (25 bp)
GGGTTCGAGAATCCCATCCAAGCAT
LOC_Os05g33270
Os.10474.1.S1_s_at--462--10111Chr05:19423684..19423708 (25 bp)
TATGGAGGGCCACCCTTGAACTATG
LOC_Os05g33270
Os.10474.1.S1_s_at--29--1351Chr05:19423714..19423738 (25 bp)
AGAGTACCTTGTGGGCAGACAGCGT
LOC_Os05g33270
Os.10474.1.S1_s_at--783--2151Chr05:19423732..19423756 (25 bp)
ACAGCGTCTCTGAATGGTAATCTTG
LOC_Os05g33270
Os.10474.1.S1_s_at--378--8211Chr05:19423804..19423828 (25 bp)
GGAATCCATTACACAGAAGCTGCGA
LOC_Os05g33270
Os.10474.1.S1_s_at--63--5411Chr05:19423819..19423843 (25 bp)
GAAGCTGCGAATTTCCACATCGCGT
LOC_Os05g33270
Os.10474.1.S1_s_at--330--531Chr05:19423837..19423861 (25 bp)
ATCGCGTCGCAGATCCTTACAGGGA
LOC_Os05g33270
Os.10474.1.S1_s_at--246--1071Chr05:19423857..19423881 (25 bp)
AGGGAGATACTCTGACCCTCCATTT
LOC_Os05g33270
Target Sequence 
ATCCCAGCTGGATGAACTTCGTTGTGTAGCAAAGCATAATCGTGTNGCAAAGCTTTTCAACTTACAGCTGCATGCACTTT
GCACAAAGTTAAGAGNTGAATTCGCTGGGNCTAGTATCACTTATGTNGACATCTACACCATCAAGTACAGCCTGATCGCT
AATTATTCGCGCTATGGGTTCGAGAATCCCATCCAAGCATGCTGTGGATATGGAGGGCCACCCTTGAACTATGNCAGTAG
AGTACCTTGTGGGCAGACAGCGTCTCTGAATGGTAATCTTGTANCAGCCAAAGGGTGCAAGGNCAGTACAGAATTTGTCA
ATTGGGATGGAATCCATTACACAGAAGCTGCGAATTTCCACATCGCGTCGCAGATCCTTACAGGGAGATACTCTGACCCT
CCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10474.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis