Browse Element(s) Details


Os.10491.1.S1_at

Description gb:CR285065
DB_XREF= gi:44671631
DB_XREF=CR285065
CLONE=p689g04p3
TID=Os.10491.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.10491 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0469011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04650Os.49872.1.S1_at11/113+2178883..2180634Cytochrome P450 family protein, expressed
LOC_Os03g04660OsAffx.12732.1.S1_s_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04660OsAffx.12732.1.S1_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04660Os.48829.1.A1_at11/113+2190936..2192991Cytochrome P450 family protein, expressed
LOC_Os03g04670OsAffx.3131.1.S1_at11/113+2197711..2199914hypothetical protein
LOC_Os03g04680NANA3+2202489..2204105Cytochrome P450 family protein, expressed
LOC_Os03g04690Os.10491.1.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04690Os.47904.2.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04690Os.47904.1.S1_at11/113+2204717..2207859expressed protein
LOC_Os03g04700Os.24942.4.A1_x_at7/113+2220338..2221135hypothetical protein
LOC_Os03g04700Os.24942.4.A1_at4/113+2220338..2221135hypothetical protein
LOC_Os03g04710Os.6284.1.S1_at11/113+2228018..2229741expressed protein
LOC_Os03g04720NANA3+2232800..2234530hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10491.1.S1_at--636--10051Chr03:2205068..2205092 (25 bp)
TAGTATGCTCTAGAACCTGGTTTAA
LOC_Os03g04690
Os.10491.1.S1_at--114--6551Chr03:2205038..2205062 (25 bp)
GATTTTGGGAACTGGCTGTCACTAG
LOC_Os03g04690
Os.10491.1.S1_at--522--8331Chr03:2205025..2205049 (25 bp)
GGCTGTCACTAGTTTACTCTTATCT
LOC_Os03g04690
Os.10491.1.S1_at--511--2011Chr03:2205010..2205034 (25 bp)
ACTCTTATCTGTTAACTCCAGTGTA
LOC_Os03g04690
Os.10491.1.S1_at--352--4351Chr03:2204993..2205017 (25 bp)
CCAGTGTAGCTTTGCTGACCTCAAA
LOC_Os03g04690
Os.10491.1.S1_at--500--2351Chr03:2204971..2204995 (25 bp)
AAAGCAGCACAGCTGTGCCGCAGTA
LOC_Os03g04690
Os.10491.1.S1_at--636--7291Chr03:2204957..2204981 (25 bp)
GTGCCGCAGTAGTTAGATGTTGTCT
LOC_Os03g04690
Os.10491.1.S1_at--286--10831Chr03:2204900..2204924 (25 bp)
TTGTGCCTGATCTGGCTTGTAATCA
LOC_Os03g04690
Os.10491.1.S1_at--471--291Chr03:2204863..2204887 (25 bp)
ATAGTTTGACATCATCATGCCCTGC
LOC_Os03g04690
Os.10491.1.S1_at--117--611Chr03:2204847..2204871 (25 bp)
ATGCCCTGCTGTCTGCTAGAACATG
LOC_Os03g04690
Os.10491.1.S1_at--770--6311Chr03:2204811..2204835 (25 bp)
GATGAAACCGATATACTCCTACGGA
LOC_Os03g04690
Target Sequence 
TAGTATGCTCTAGAACCTGGTTTAACTCTAGATTTTGGGAACTGGCTGTCACTAGTTTACTCTTATCTGTTAACTCCAGT
GTAGCTTTGCTGACCTCAAAGCAGCACAGCTGTGCCGCAGTAGTTAGATGTTGTCTTATTTGTCATACATAGTACTTATC
TTCAGAAATTGTGCCTGATCTGGCTTGTAATCAAGGACGGGTCAAATAGTTTGACATCATCATGCCCTGCTGTCTGCTAG
AACATGTGATGATATCAGATGAAACCGATATACTCCTACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis