Browse Element(s) Details


Os.10706.1.S1_a_at

Description gb:AK101996.1
DB_XREF= gi:32987205
TID=Os.10706.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10706 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0413G02.13 (P0413G02.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079J12, full insert sequence.
FL= gb:AK101996.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5690011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56850Os.11659.1.S1_at9/111+33163115..33164962expressed protein
LOC_Os01g56850OsAffx.11628.1.S1_x_at1/111+33163115..33164962expressed protein
LOC_Os01g56860Os.45992.1.S1_at11/111+33166255..33169237WD-repeat protein 13, putative, expressed
LOC_Os01g56870Os.52721.1.S1_at10/111+33169562..33174732expressed protein
LOC_Os01g56880Os.15904.1.S1_at11/111+33175084..33179387expressed protein
LOC_Os01g56890Os.8123.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56890OsAffx.11629.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56900Os.10706.1.S1_a_at11/111+33187802..33190344expressed protein
LOC_Os01g56910Os.46009.1.S1_at11/111+33196141..33205044expressed protein
LOC_Os01g56930Os.19849.1.S1_at10/111+33213733..33219492aspartyl protease family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10706.1.S1_a_at--267--6811Chr01:33189026..33189050 (25 bp)
GTTTTCTTGCTTTCTAGAACCAGTC
LOC_Os01g56900
Os.10706.1.S1_a_at--1060--10711Chr01:33189032..33189056 (25 bp)
TTGCTTTCTAGAACCAGTCCCAGTC
LOC_Os01g56900
Os.10706.1.S1_a_at--1073--1131Chr01:33189047..33189071 (25 bp)
AGTCCCAGTCCCATGGACAAGTTGC
LOC_Os01g56900
Os.10706.1.S1_a_at--650--5611Chr01:33189062..33189086 (25 bp)
GACAAGTTGCATTTGGTGTTTGCTA
LOC_Os01g56900
Os.10706.1.S1_a_at--555--6171Chr01:33189100..33189124 (25 bp)
GAGGACGCTGCAAGGATTAACCAAG
LOC_Os01g56900
Os.10706.1.S1_a_at--903--10491Chr01:33189116..33189140 (25 bp)
TTAACCAAGCTTGATGTCCAGCCGC
LOC_Os01g56900
Os.10706.1.S1_a_at--641--2691Chr01:33189122..33189146 (25 bp)
AAGCTTGATGTCCAGCCGCAGAACT
LOC_Os01g56900
Os.10706.1.S1_a_at--717--1671Chr01:33189135..33189159 (25 bp)
AGCCGCAGAACTCCGTTTGCATGGT
LOC_Os01g56900
Os.10706.1.S1_a_at--1141--2531Chr01:33189143..33189167 (25 bp)
AACTCCGTTTGCATGGTCACCTTAT
LOC_Os01g56900
Os.10706.1.S1_a_at--351--7831Chr01:33189157..33189181 (25 bp)
GGTCACCTTATGCACCAGTGAGATT
LOC_Os01g56900
Os.10706.1.S1_a_at--3--5091Chr01:33189168..33189192 (25 bp)
GCACCAGTGAGATTTGCAGGTATCT
LOC_Os01g56900
Target Sequence 
GTTTTCTTGCTTTCTAGAACCAGTCCCAGTCCCATGGACAAGTTGCATTTGGTGTTTGCTATTGATGTGAGGAAGAGGAC
GCTGCAAGGATTAACCAAGCTTGATGTCCAGCCGCAGAACTCCGTTTGCATGGTCACCTTATGCACCAGTGAGATTTGCA
GGTATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10706.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis