Browse Element(s) Details


Os.10748.1.S1_at

Description gb:AU075676
DB_XREF= gi:5455510
DB_XREF=AU075676
CLONE=E10683_7Z
TID=Os.10748.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.10748 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3748011/11Surfeit locus protein 5 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37432OsAffx.29571.1.S1_at11/118+23579789..23584677MATE efflux family protein, expressed
LOC_Os08g37432Os.6517.1.S1_at11/118+23579789..23584677MATE efflux family protein, expressed
LOC_Os08g37444Os.4838.1.S1_s_at11/118+23584920..23589406Signal recognition particle, alpha subunit, N-terminal family protein, expressed
LOC_Os08g37456Os.11122.1.S1_at11/118+23590772..23594404oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g37470OsAffx.17379.1.S1_at11/118+23597959..23599250hypothetical protein
LOC_Os08g37480Os.10066.1.A1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10748.1.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.2.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.1.A1_x_at10/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.13501.1.S1_at1/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37490Os.18498.1.S1_at10/118+23617494..2361966214-3-3, putative, expressed
LOC_Os08g37520Os.49968.1.S1_at11/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.2.S1_x_at11/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.1.S2_at10/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.2.S1_at9/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.54805.2.S1_at1/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37500Os.24493.1.A1_at11/118+23623306..23625301expressed protein
LOC_Os08g37530NANA8+23634567..23640677retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10748.1.S1_at--1136--10011Chr08:23611386..23611410 (25 bp)
TAGCAAGCACCTAGATTCACTGCAA
LOC_Os08g37480
Os.10748.1.S1_at--316--2911Chr08:23611361..23611385 (25 bp)
AAGGATTGCCTGTTGATATTACGGA
LOC_Os08g37480
Os.10748.1.S1_at--393--6511Chr08:23611347..23611371 (25 bp)
GATATTACGGAACAGCGCCGCTGTG
LOC_Os08g37480
Os.10748.1.S1_at--269--4571Chr08:23611333..23611357 (25 bp)
GCGCCGCTGTGTAGTACTCTAAATG
LOC_Os08g37480
Os.10748.1.S1_at--423--7871Chr08:23611281..23611305 (25 bp)
GGTTTGGCTTTTAGATGTGACCATA
LOC_Os08g37480
Os.10748.1.S1_at--275--6271Chr08:23611268..23611292 (25 bp)
GATGTGACCATATATGCTCCTTTTT
LOC_Os08g37480
Os.10748.1.S1_at--1024--2951Chr08:23611228..23611252 (25 bp)
AATGGCCAATTCCTAACTAGTCAGA
LOC_Os08g37480
Os.10748.1.S1_at--1083--2531Chr08:23611180..23611204 (25 bp)
AACTCATTGACCGTCTACTATGGTA
LOC_Os08g37480
Os.10748.1.S1_at--686--991Chr08:23611153..23611177 (25 bp)
AGGATTATCACTTCTGAATAGGCGT
LOC_Os08g37480
Os.10748.1.S1_at--356--5232Chr08:23611138..23611162 (25 bp)
GAATAGGCGTGGACTTTAAAGCAGT
LOC_Os08g37480
Os.10748.1.S1_at--234--5692Chr08:23611104..23611128 (25 bp)
GACTTGTTCAGTGTATTTTGTGTAA
LOC_Os08g37480
Target Sequence 
TAGCAAGCACCTAGATTCACTGCAAAAGGATTGCCTGTTGATATTACGGAACAGCGCCGCTGTGTAGTACTCTAAATGAT
TTGTCTTTTTAAGCCTAAGTTATTTGGTTTGGCTTTTAGATGTGACCATATATGCTCCTTTTTATATTAAATTGACTAAA
TGGCCAATTCCTAACTAGTCAGAAATGACTAGTAAAGTCTACAAGAAACTCATTGACCGTCTACTATGGTATCAGGATTA
TCACTTCTGAATAGGCGTGGACTTTAAAGCAGTAGTGACAATGACTTGTTCAGTGTATTTTGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis