Browse Element(s) Details


Os.10779.1.S1_at

Description gb:AK119298.1
DB_XREF= gi:37988921
TID=Os.10779.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033027C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E09, full insert sequence.
FL= gb:AK101151.1 gb:AK119298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1469011/11V-type ATPase 116kDa subunit family protein, expressed
LOC_Os07g224401/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14640OsAffx.3243.1.S1_at11/113+7938552..7940292expressed protein
LOC_Os03g14650NANA3+7944733..7945173hypothetical protein
LOC_Os03g14669OsAffx.12862.1.S1_x_at11/113+7956242..7959984Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g14669Os.12037.1.S1_at1/113+7956242..7959984Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g14690Os.10779.1.S1_at11/113+7961449..7968486V-type ATPase 116kDa subunit family protein, expressed
LOC_Os03g14700OsAffx.25088.1.S1_at11/113+7968917..7973732calcium-dependent lipid-binding protein, putative
LOC_Os03g14700OsAffx.9561.1.S1_at10/113+7968917..7973732calcium-dependent lipid-binding protein, putative
LOC_Os03g14710OsAffx.12863.1.S1_s_at11/113+7977212..7979387Protein kinase domain containing protein, expressed
LOC_Os03g14720Os.7650.1.S1_at11/113+7982059..7987290Transcription initiation factor IIF, alpha subunit family protein, expressed
LOC_Os03g14720OsAffx.8858.1.S1_x_at1/113+7982059..7987290Transcription initiation factor IIF, alpha subunit family protein, expressed
LOC_Os03g14730Os.27673.1.S1_at10/113+7990229..7991617esterase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10779.1.S1_at--411--9251Chr03:7967803..7967922 (25 bp)
TCCTCCTAGCTTTCGGGTACAACAA
LOC_Os03g14690
Os.10779.1.S1_at--986--7031Chr03:7967914..7967938 (25 bp)
GTACAACAACATTCTTATCCGCATC
LOC_Os03g14690
Os.10779.1.S1_at--86--10471Chr03:7967946..7967970 (25 bp)
TTACCATCTTCATCTGTGCGACAGT
LOC_Os03g14690
Os.10779.1.S1_at--1127--3432Chr03:7967967..7967991 (25 bp)
CAGTTGGTGTCTTGCTTGTTATGGA
LOC_Os03g14690
Os.10779.1.S1_at--188--9791Chr03:7967997..7968021 (25 bp)
TAAGTGCATTCCTTCACGCCTTAAG
LOC_Os03g14690
Os.10779.1.S1_at--90--1811Chr03:7968012..7968036 (25 bp)
ACGCCTTAAGGCTACATTGGGTGGA
LOC_Os03g14690
Os.10779.1.S1_at--572--4611Chr03:7968163..7968187 (25 bp)
GCGTCCTTTTTTCTCAAAGCGTCAA
LOC_Os03g14690
Os.10779.1.S1_at--144--351Chr03:7968208..7968232 (25 bp)
ATAAACCTCCAGTTTGTTCCTTCAT
LOC_Os03g14690
Os.10779.1.S1_at--630--4971Chr03:7968250..7968274 (25 bp)
GCATCATTTTTTGCTTTGCTACGAA
LOC_Os03g14690
Os.10779.1.S1_at--363--7731Chr03:7968319..7968343 (25 bp)
GGTGGCATCACCCTTATTTTGGTGT
LOC_Os03g14690
Os.10779.1.S1_at--574--1171Chr03:7968361..7968385 (25 bp)
AGTAAATTCTGCACTCGGGTTGCCA
LOC_Os03g14690
Target Sequence 
TCCTCCTAGCTTTCGGGTACAACAACATTCTTATCCGCATCGCTGGCATTACCATCTTCATCTGTGCGACAGTTGGTGTC
TTGCTTGTTATGGAGACCCTAAGTGCATTCCTTCACGCCTTAAGGCTACATTGGGTGGAGTTCCAGAACAAATTCTATGA
GGGCGATGGATACAAGTTTGCGCCCTTCTCTTTCGCACTGATCAGTGAAGAGGAAGACTGAGTTTGCGCAATTATTGCAT
CTATTGTAGCGTGTAATTTCTTGGGGCGTCCTTTTTTCTCAAAGCGTCAAGTATTTATCACGGAAGAATCATAAACCTCC
AGTTTGTTCCTTCATCAGGAAAGGGACTAGCAGCATCATTTTTTGCTTTGCTACGAATGATTCGTGGCAAGATGATTTTT
TGGGTGGCCGTTGGCACATCGGGTGGCATCACCCTTATTTTGGTGTAAGGCTAATAAATAATAAGTAAATTCTGCACTCG
GGTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis