Browse Element(s) Details


Os.10806.1.S1_at

Description gb:CB667556
DB_XREF= gi:29671281
DB_XREF=OSJNEd14O24.r
CLONE=OSJNEd14O24
TID=Os.10806.1
CNT=25
FEA=FLmRNA
TIER=Stack
STK=8
UG=Os.10806 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-034-B09, full insert sequence
FL= gb:AK104343.1 gb:AK065911.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0898011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08950OsAffx.14604.1.S1_x_at10/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08950OsAffx.14604.1.S1_at8/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08960Os.12803.1.S1_s_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.46302.1.S1_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.12803.1.S1_at7/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.54503.1.A1_at5/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.5717.1.S1_at1/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08970Os.54219.1.S1_at11/115+4943452..4949049Structure-specific recognition protein 1 homolog, putative, expressed
LOC_Os05g08980Os.10806.1.S1_at11/115+4949582..4954534expressed protein
LOC_Os05g08990Os.12172.1.S1_at11/115+4954769..4959839Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os05g09000Os.23351.1.A1_at11/115+4961618..4964933expressed protein
LOC_Os05g09010Os.40360.1.S1_at9/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40855.2.S1_x_at7/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40360.1.S1_x_at6/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40855.5.S1_x_at3/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40855.4.S1_x_at2/115+4970285..4973033hypothetical protein
LOC_Os05g09020OsAffx.14605.1.S1_s_at11/115+4976301..4977646WRKY transcription factor 50, putative, expressed
LOC_Os05g09020OsAffx.14605.1.S1_at2/115+4976301..4977646WRKY transcription factor 50, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10806.1.S1_at--284--2411Chr05:4953026..4953049 (24 bp)
AAACAGAACTTTTCATGTGCTGGTG
LOC_Os05g08980
Os.10806.1.S1_at--394--7391Chr05:4953049..4953073 (25 bp)
GTGATGTACCTCTGCCAATTTATTG
LOC_Os05g08980
Os.10806.1.S1_at--674--8551Chr05:4953081..4953105 (25 bp)
TGGTGGAAAGCTGCCAGAACGCCTG
LOC_Os05g08980
Os.10806.1.S1_at--212--9831Chr05:4954063..4954187 (25 bp)
TAAACAGGTCCAACGTCTGCCAAAG
LOC_Os05g08980
Os.10806.1.S1_at--357--9731Chr05:4954188..4954212 (25 bp)
TAATTTTTGTCAGGGCGGTATCCGA
LOC_Os05g08980
Os.10806.1.S1_at--691--5851Chr05:4954231..4954255 (25 bp)
GACCACGCCCTCCATTGAAATGCTG
LOC_Os05g08980
Os.10806.1.S1_at--797--6691Chr05:4954292..4954316 (25 bp)
GTTCCAGCCTTTTCAAGTTTTCTGC
LOC_Os05g08980
Os.10806.1.S1_at--1122--7771Chr05:4954325..4954349 (25 bp)
GGTGCTGCTACATTTTAAAGCTTGT
LOC_Os05g08980
Os.10806.1.S1_at--160--10371Chr05:4954371..4954395 (25 bp)
TTTTTTACCGTGCTATGCTGGCACC
LOC_Os05g08980
Os.10806.1.S1_at--278--8511Chr05:4954389..4954413 (25 bp)
TGGCACCGCTTGTGGTTTCAGAATT
LOC_Os05g08980
Os.10806.1.S1_at--851--5211Chr05:4954409..4954433 (25 bp)
GAATTTCAGGCAACACTTTGCCGTA
LOC_Os05g08980
Target Sequence 
AAACAGAACTTTTCATGTGCTGGTGTGATGTACCTCTGCCAATTTATTGAGCAAAATGGTGGAAAGCTGCCAGAACGCCT
GGAAGGCTCAAAAATGGCTGGGAAGCGTTTTGGAAGCCAAAATCTCATACAGGGGTTGCAACTGGCCATAGAAACAGGGA
ATTTTGACAAGGAAACGTTCAATGCACTTAAGAACAACTCTGATTCAAGATAAACAGGTCCAACGTCTGCCAAAGTAATT
TTTGTCAGGGCGGTATCCGAGGGCATCTCATCTTTCCAGACCACGCCCTCCATTGAAATGCTGTAAAGGATAATTTCTTA
CTAGTTTAACATGTAAAAAGTTCCAGCCTTTTCAAGTTTTCTGCTTGCAGAAGGTGCTGCTACATTTTAAAGCTTGTGCA
ATACTTAGTGGTTAGGGTTTTTTTACCGTGCTATGCTGGCACCGCTTGTGGTTTCAGAATTTCAGGCAACACTTTGCCGT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis