Browse Element(s) Details


Os.10823.2.S1_at

Description gb:AK064162.1
DB_XREF= gi:32974180
TID=Os.10823.2
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-G07, full insert sequence.
FL= gb:AK064162.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4089011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40830OsAffx.27265.1.S1_at11/115+23869826..23870824hypothetical protein
LOC_Os05g40840OsAffx.15051.1.S1_at11/115+23872813..23873303hypothetical protein
LOC_Os05g40840OsAffx.15051.1.S1_x_at11/115+23872813..23873303hypothetical protein
LOC_Os05g40850OsAffx.4582.1.S1_at11/115+23875485..23876353hypothetical protein
LOC_Os05g40850OsAffx.4582.1.S1_x_at11/115+23875485..23876353hypothetical protein
LOC_Os05g40850OsAffx.15051.1.S1_x_at1/115+23875485..23876353hypothetical protein
LOC_Os05g40860Os.28943.1.S1_x_at3/115+23878713..23881769retrotransposon protein, putative, unclassified
LOC_Os05g40870NANA5+23882697..23888339retrotransposon protein, putative, unclassified
LOC_Os05g40880OsAffx.27266.1.S1_at10/115+23891210..23892247hypothetical protein
LOC_Os05g40880OsAffx.20993.1.S1_at1/115+23891210..23892247hypothetical protein
LOC_Os05g40890Os.10823.1.S1_x_at11/115+23895371..23896542expressed protein
LOC_Os05g40890Os.10823.2.S1_at11/115+23895371..23896542expressed protein
LOC_Os05g40900Os.26497.1.S1_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.4583.1.S1_s_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.19953.4.S1_s_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.19953.5.S1_x_at11/115+23907303..23911230expressed protein
LOC_Os05g40910Os.51274.1.S1_at9/115+23912941..23914408expressed protein
LOC_Os05g40920Os.56288.1.S1_at11/115+23917060..23919400expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10823.2.S1_at--713--4931Chr05:23896196..23896220 (25 bp)
GCTTGTAGTAGTTTCATATCCCTGC
LOC_Os05g40890
Os.10823.2.S1_at--765--6831Chr05:23896206..23896230 (25 bp)
GTTTCATATCCCTGCTAGCTATTAG
LOC_Os05g40890
Os.10823.2.S1_at--571--131Chr05:23896234..23896258 (25 bp)
ATTCACATAATTAATCCAGCGTCTA
LOC_Os05g40890
Os.10823.2.S1_at--992--9211Chr05:23896248..23896272 (25 bp)
TCCAGCGTCTAATTACATAAGTCGA
LOC_Os05g40890
Os.10823.2.S1_at--662--1151Chr05:23896267..23896291 (25 bp)
AGTCGAGAGGCTGTATGTGTGATTT
LOC_Os05g40890
Os.10823.2.S1_at--996--5931Chr05:23896309..23896333 (25 bp)
GAGCAGATAGCTAGCAAGTTACAAC
LOC_Os05g40890
Os.10823.2.S1_at--983--1211Chr05:23896325..23896349 (25 bp)
AGTTACAACTGCAGATCGAATTGAG
LOC_Os05g40890
Os.10823.2.S1_at--1088--3871Chr05:23896370..23896394 (25 bp)
CTGTAAAGCTTTTGCTAGCTTGGGC
LOC_Os05g40890
Os.10823.2.S1_at--118--4471Chr05:23896393..23896417 (25 bp)
GCCTCCTCTTTGCAGCAGTAGTATA
LOC_Os05g40890
Os.10823.2.S1_at--321--171Chr05:23896449..23896473 (25 bp)
ATTTTGTCGACATGCATATGCACAT
LOC_Os05g40890
Os.10823.2.S1_at--1123--5111Chr05:23896468..23896492 (25 bp)
GCACATGAGCACATCACGTTGGGAT
LOC_Os05g40890
Target Sequence 
GCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAG
GCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATA
TTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAAT
TAATTAATCAGTGATTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10823.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis