Browse Element(s) Details


Os.10842.1.S1_x_at

Description gb:AK059278.1
DB_XREF= gi:32969296
TID=Os.10842.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033128E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-C08, full insert sequence.
FL= gb:AK059278.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0424011/11EF hand family protein, expressed
LOC_Os11g044809/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04210Os.52118.1.S1_at11/1112+1775603..1776673expressed protein
LOC_Os12g04220OsAffx.18661.1.S1_at11/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220OsAffx.18661.2.S1_x_at8/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220OsAffx.24652.1.S1_x_at1/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04220Os.38273.1.S1_at1/1112+1782572..1788817Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os12g04230OsAffx.18662.1.S1_at11/1112+1789093..1790190hypothetical protein
LOC_Os12g04240Os.10842.1.S1_at11/1112+1793279..1796384EF hand family protein, expressed
LOC_Os12g04240Os.10842.1.S1_x_at11/1112+1793279..1796384EF hand family protein, expressed
LOC_Os12g04250NANA12+1798483..1799978retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04260Os.26862.1.S1_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.3.S1_a_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.1.S1_s_at8/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.10427.1.S1_a_at2/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04270Os.5332.1.S1_at10/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04270Os.24981.1.A1_at1/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04280OsAffx.19484.1.S1_at11/1112+1812870..1814809hypothetical protein
LOC_Os12g04290Os.26409.1.S1_a_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.2.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.3.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10842.1.S1_x_at--693--7392Chr12:1794496..1794520 (25 bp)
GTGATGCTCTTCTCAGTCTGGGATA
LOC_Os12g04240
Os.10842.1.S1_x_at--365--1212Chr12:1794468..1794492 (25 bp)
AGTTTCTCCAACTGTGCTAGACTTG
LOC_Os12g04240
Os.10842.1.S1_x_at--1085--9472Chr12:1793626..1793650 (25 bp)
TCTGCGACTTTTACTTACGAGGCTT
LOC_Os12g04240
Os.10842.1.S1_x_at--961--1872Chr12:1793610..1793634 (25 bp)
ACGAGGCTTTCATGCTGACTGTACT
LOC_Os12g04240
Os.10842.1.S1_x_at--104--7012Chr12:1793590..1793614 (25 bp)
GTACTCCCTTTTCTCATTGCATAAA
LOC_Os12g04240
Os.10842.1.S1_x_at--95--4772Chr12:1793555..1793579 (25 bp)
GCTGCACAGTCGACCTTTCAGGAGA
LOC_Os12g04240
Os.10842.1.S1_x_at--732--8052Chr12:1793535..1793559 (25 bp)
GGAGACCATGCCCATTGTGTTGAAA
LOC_Os12g04240
Os.10842.1.S1_x_at--616--1912Chr12:1793500..1793524 (25 bp)
ACGTGTGTTCATCGACTTGTTTTTA
LOC_Os12g04240
Os.10842.1.S1_x_at--39--732Chr12:1793450..1793474 (25 bp)
ATGATACAAGTGCTTCCCTGATCGG
LOC_Os12g04240
Os.10842.1.S1_x_at--147--711Chr12:1793374..1793398 (25 bp)
ATGATGTCATGACTCTTCCGATAGA
LOC_Os12g04240
Os.10842.1.S1_x_at--629--5711Chr12:1793364..1793388 (25 bp)
GACTCTTCCGATAGACATCACATAT
LOC_Os12g04240
Target Sequence 
GTGATGCTCTTCTCAGTCTGGGATATTCAGTTTCTCCAACTGTGCTAGACTTGCTTGTGTCAAAGTTTGACAAGACTGGG
GGCAAGAACAAAGCCATTGAATATGATAACTTCATTGAATGCTGCCTCACAGTTAAGGGTCTGACTGAGAAGTTCAAGGA
AAAAGACACAGCCTTCTCGGGCTCTGCGACTTTTACTTACGAGGCTTTCATGCTGACTGTACTCCCTTTTCTCATTGCAT
AAAATGGCAGTGTGCTGCACAGTCGACCTTTCAGGAGACCATGCCCATTGTGTTGAAACGGTTCTGTAACGTGTGTTCAT
CGACTTGTTTTTAACTGAGTTTATTGTTTGGATTTGAAATGATACAAGTGCTTCCCTGATCGGGCATGTTACAAGTTANA
ANNNNNATGTATGTGAGGATATATAGCTCCGAAAATGATGTCATGACTCTTCCGATAGACATCACATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10842.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis