Browse Element(s) Details


Os.10900.1.S1_at

Description gb:AK103319.1
DB_XREF= gi:32988528
TID=Os.10900.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10900 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative MLH1 (P0401G10.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125I19, full insert sequence.
FL= gb:AK070111.1 gb:AK103319.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7288011/11DNA mismatch repair protein MutL containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72820Os.32046.1.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.4.S1_x_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.3.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72820Os.32046.2.S1_at11/111+42567673..42572096CRS1/YhbY domain containing protein, expressed
LOC_Os01g72834Os.6252.1.S1_at11/111+42574660..42582121RNA recognition motif, putative, expressed
LOC_Os01g72850OsAffx.24018.1.S1_at11/111+42582503..42584038GDSL-motif lipase/hydrolase family protein, putative
LOC_Os01g72860Os.19279.2.S1_x_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72860Os.19279.1.S1_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72870OsAffx.9748.1.S1_x_at11/111+42591871..42595298expressed protein
LOC_Os01g72870Os.48288.1.S1_at11/111+42591871..42595298expressed protein
LOC_Os01g72870OsAffx.9748.1.S1_at10/111+42591871..42595298expressed protein
LOC_Os01g72880Os.10900.1.S1_at11/111+42595750..42601761DNA mismatch repair protein MutL containing protein, expressed
LOC_Os01g72890Os.22513.1.S1_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.1.S1_a_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.2.S1_x_at8/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890OsAffx.24019.1.S1_x_at7/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72900Os.27963.1.A1_at11/111+42608122..42608821ABA/WDS induced protein, expressed
LOC_Os01g72910Os.7372.1.S1_at11/111+42609680..42610468ABA/WDS induced protein, expressed
LOC_Os01g72920NANA1+42615321..42616454hypothetical protein
LOC_Os01g72930Os.43014.1.S1_at11/111+42624107..42626907pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006298biological_processmismatch repair
GO:0005524molecular_functionATP binding
GO:0030674molecular_functionprotein binding, bridging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10900.1.S1_at--437--3131Chr01:42601515..42601539 (25 bp)
AATTTCACCGTATTATGTACTTTGA
LOC_Os01g72880
Os.10900.1.S1_at--77--7011Chr01:42601531..42601555 (25 bp)
GTACTTTGATAGTGTCTGTAGAAAC
LOC_Os01g72880
Os.10900.1.S1_at--396--5571Chr01:42601564..42601588 (25 bp)
GAAAGATGGCTTTACTTCTGAATTG
LOC_Os01g72880
Os.10900.1.S1_at--1086--5191Chr01:42601583..42601607 (25 bp)
GAATTGAAAGTTAACGATGCCAGCA
LOC_Os01g72880
Os.10900.1.S1_at--115--1891Chr01:42601596..42601620 (25 bp)
ACGATGCCAGCAATTGTATATTCTG
LOC_Os01g72880
Os.10900.1.S1_at--824--10211Chr01:42601614..42601638 (25 bp)
TATTCTGATCAAACATTGGCGTCTA
LOC_Os01g72880
Os.10900.1.S1_at--486--2511Chr01:42601625..42601649 (25 bp)
AACATTGGCGTCTACTACTCTACTA
LOC_Os01g72880
Os.10900.1.S1_at--550--9911Chr01:42601640..42601664 (25 bp)
TACTCTACTAGCAAGTGATCTTCCT
LOC_Os01g72880
Os.10900.1.S1_at--283--2871Chr01:42601652..42601676 (25 bp)
AAGTGATCTTCCTTAGCTCCAGGTC
LOC_Os01g72880
Os.10900.1.S1_at--272--9991Chr01:42601665..42601689 (25 bp)
TAGCTCCAGGTCGACAAGAATCAAG
LOC_Os01g72880
Os.10900.1.S1_at--1145--2711Chr01:42601687..42601711 (25 bp)
AAGAATGTGTGTGTTGTACCCAATT
LOC_Os01g72880
Target Sequence 
AATTTCACCGTATTATGTACTTTGATAGTGTCTGTAGAAACTGAAGAAAGAAAGATGGCTTTACTTCTGAATTGAAAGTT
AACGATGCCAGCAATTGTATATTCTGATCAAACATTGGCGTCTACTACTCTACTAGCAAGTGATCTTCCTTAGCTCCAGG
TCGACAAGAATCAAGAATGTGTGTGTTGTACCCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis