Browse Element(s) Details


Os.10901.1.S1_a_at

Description gb:AY452478.1
DB_XREF= gi:38455771
GEN=COC1
TID=Os.10901.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10901 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) circadian oscillator component (COC1) mRNA, complete cds.
PROD=circadian oscillator component
FL= gb:AY452478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0611011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06110Os.10901.1.S1_a_at11/118+3359878..3367064myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g06110OsAffx.13369.1.S1_at1/118+3359878..3367064myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g06120OsAffx.29062.1.S1_at11/118+3371125..3371988B3 DNA binding domain containing protein
LOC_Os08g06120OsAffx.29062.1.S1_x_at11/118+3371125..3371988B3 DNA binding domain containing protein
LOC_Os08g06130Os.35855.2.S1_x_at11/118+3376195..3380659expressed protein
LOC_Os08g06130Os.35855.1.S1_at10/118+3376195..3380659expressed protein
LOC_Os08g06140Os.8787.1.S1_at11/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.1.S1_a_at11/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.2.S1_x_at8/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.2.S1_at2/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06150Os.40855.5.S1_x_at3/118+3391784..3392917hypothetical protein
LOC_Os08g06150Os.40360.1.S1_x_at2/118+3391784..3392917hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0042752biological_processregulation of circadian rhythm
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10901.1.S1_a_at--18--9771Chr08:3366271..3366295 (25 bp)
TAACCACCGTAGATTTAGGAGCAGT
LOC_Os08g06110
Os.10901.1.S1_a_at--28--1071Chr08:3366423..3366447 (25 bp)
AGGGTCGTCTGGCTTTTGATGCACT
LOC_Os08g06110
Os.10901.1.S1_a_at--919--10031Chr08:3366454..3366478 (25 bp)
TAGAGAAAGGCTTCCCCAAAGCTTT
LOC_Os08g06110
Os.10901.1.S1_a_at--290--2691Chr08:3366472..3366496 (25 bp)
AAGCTTTTCTCCTCCGCAAGTAGAA
LOC_Os08g06110
Os.10901.1.S1_a_at--333--5271Chr08:3366562..3366586 (25 bp)
GAATGCCGCTATTATTGATCAAGAA
LOC_Os08g06110
Os.10901.1.S1_a_at--529--5471Chr08:3366584..3366608 (25 bp)
GAACTCGACACAGCGGATGAGCCAA
LOC_Os08g06110
Os.10901.1.S1_a_at--437--4391Chr08:3366604..3366628 (25 bp)
GCCAAGAGCTTCCTTTCCTAATGAA
LOC_Os08g06110
Os.10901.1.S1_a_at--217--5531Chr08:3366646..3366670 (25 bp)
GAAATCTCGCAGGACCGGTTTCAAA
LOC_Os08g06110
Os.10901.1.S1_a_at--936--4211Chr08:3366713..3366737 (25 bp)
CCGGCTAGCGATGAGGTTGGTACCA
LOC_Os08g06110
Os.10901.1.S1_a_at--549--4711Chr08:3366791..3366815 (25 bp)
GCTGGCCTCTACCAAGTCAGAAGTT
LOC_Os08g06110
Os.10901.1.S1_a_at--193--10691Chr08:3366851..3366875 (25 bp)
TTCCAATGCATTACCTCACAAACTC
LOC_Os08g06110
Target Sequence 
TAACCACCGTAGATTTAGGAGCAGTGCAAGCACAAGTGATTCATGGAAGGAAGTTTCTGAANAGGGTCGTCTGGCTTTTG
ATGCACTGTTCAGTAGAGAAAGGCTTCCCCAAAGCTTTTCTCCTCCGCAAGTAGAAGGATCAAAGGAGATTAGCAAGGAG
GAAGAAGATGAAGTAACCACGGTGACGGTTGACCTCAACAAGAATGCCGCTATTATTGATCAAGAACTCGACACAGCGGA
TGAGCCAAGAGCTTCCTTTCCTAATGAATTGTCAAACCTGAAGCTGAAATCTCGCAGGACCGGTTTCAAACCATACAAGA
GGTGCTCAGTGGAAGCGAAGGAGAACAGGGTACCGGCTAGCGATGAGGTTGGTACCAAGAGGATTCGTCTTGAGAGCGAA
GCATCGACATGATTTGCTTTCCACCTGGTTGCTGGCCTCTACCAAGTCAGAAGTTAAATTTACATCNGAGCTACCATAGG
ACTTCAGACCTTCCAATGCATTACCTCACAAACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10901.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis