Browse Element(s) Details


Os.8787.2.S1_x_at

Description gb:NM_189045.1
DB_XREF= gi:34905173
GEN=P0498E12.3
TID=Os.8787.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0498E12.3 (P0498E12.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0498E12.3 (P0498E12.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g061408/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06110Os.10901.1.S1_a_at11/118+3359878..3367064myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g06110OsAffx.13369.1.S1_at1/118+3359878..3367064myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g06120OsAffx.29062.1.S1_at11/118+3371125..3371988B3 DNA binding domain containing protein
LOC_Os08g06120OsAffx.29062.1.S1_x_at11/118+3371125..3371988B3 DNA binding domain containing protein
LOC_Os08g06130Os.35855.2.S1_x_at11/118+3376195..3380659expressed protein
LOC_Os08g06130Os.35855.1.S1_at10/118+3376195..3380659expressed protein
LOC_Os08g06140Os.8787.1.S1_at11/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.1.S1_a_at11/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.2.S1_x_at8/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.2.S1_at2/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06150Os.40855.5.S1_x_at3/118+3391784..3392917hypothetical protein
LOC_Os08g06150Os.40360.1.S1_x_at2/118+3391784..3392917hypothetical protein
LOC_Os08g06160Os.40855.2.S1_x_at3/118+3394501..3395316hypothetical protein
LOC_Os08g06170Os.32498.1.S1_at11/118+3401932..3403624Reticuline oxidase precursor, putative, expressed
LOC_Os08g06180OsAffx.16849.1.S1_at11/118+3405986..3407050Reticuline oxidase precursor, putative
LOC_Os08g06190OsAffx.21988.1.S1_at11/118+3409139..3410827Reticuline oxidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8787.2.S1_x_at--1044--7851Chr08:3384006..3384030 (25 bp)
GGTATCACTATCCTAAGACGACGCC
LOC_Os08g06140
Os.8787.2.S1_x_at--424--10551Chr08:3383956..3383980 (25 bp)
TTCATTTACTCAACAGGGTGCTGCA
LOC_Os08g06140
Os.8787.2.S1_x_at--570--7711Chr08:3383924..3383948 (25 bp)
GGGTGCGGCTACAATCAAACCTTGA
LOC_Os08g06140
Os.8787.2.S1_x_at--1152--2351Chr08:3383908..3383932 (25 bp)
AAACCTTGATGCAGCACCGTGTTCT
LOC_Os08g06140
Os.8787.2.S1_x_at--592--4251Chr08:3383892..3383916 (25 bp)
CCGTGTTCTAGCGTTGATGGTTCAT
LOC_Os08g06140
Os.8787.2.S1_x_at--502--4831Chr08:3383388..3383412 (25 bp)
GCTAAATCTGTTCTGAGGCTGCGGA
LOC_Os08g06140
Os.8787.2.S1_x_at--1004--6731Chr08:3382898..3383337 (25 bp)
GTTCTTGCTTCACATATGTTAGTAG
LOC_Os08g06140
Os.8787.2.S1_x_at--624--6771Chr08:3382881..3382905 (25 bp)
GTTAGTAGCCACATACCCTAGTTGT
LOC_Os08g06140
Os.8787.2.S1_x_at--59--2431Chr08:3382400..3382424 (25 bp)
AAAAGCTTCATGCAAACGTGAGGAT
NONE
Os.8787.2.S1_x_at--160--7111Chr08:3382374..3382398 (25 bp)
GTCACCTGCTGCCTAGTGGATTATG
NONE
Os.8787.2.S1_x_at--595--6551Chr08:3382356..3382380 (25 bp)
GATTATGGGCCAAAGCTGATTTTGA
NONE
Target Sequence 
GGTATCACTATCCTAAGACGACGCCAAGCTCCAACTGCTAGCTCAGCTAGTTCATTTACTCAACAGGGTGCTGCAGTGCA
AAGGGTGCGGCTACAATCAAACCTTGATGCAGCACCGTGTTCTAGCGTTGATGGTTCATCAAGTTGCATCATAAATGAAG
GTGAAAGTGAACGCACCATGGAGAAACCTGAGATTGAAGAGAATGCAGGAAGTACCTTGGCTGAAGGTGGGACTTGCCAT
GAGGATGACCAGAAGGAGCATGATGCTTCAGCAGCAAATGCTAAATCTGTTCTGAGGCTGCGGAAGACAGCAGAGGGAAG
CGACAAGGAGAACAAGCAGGAGGAAGAGGAGGGTGTTCTTGCTTCACATATGTTAGTAGCCACATACCCTAGTTGTTCAG
CAGTTGTAAGTCAGGATACTTTGAAAGAGAGAGTTGAGCGAAAGTTGAAAAAAGCTTCATGCAAACGTGAGGATGGTCAC
CTGCTGCCTAGTGGATTATGGGCCAAAGCTGATTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8787.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis