Browse Element(s) Details


Os.32498.1.S1_at

Description gb:AK069480.1
DB_XREF= gi:32979504
TID=Os.32498.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative berberine bridge enzyme (P0498E12.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019G18, full insert sequence.
FL= gb:AK104045.1 gb:AK069480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0617011/11Reticuline oxidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06130Os.35855.2.S1_x_at11/118+3376195..3380659expressed protein
LOC_Os08g06130Os.35855.1.S1_at10/118+3376195..3380659expressed protein
LOC_Os08g06140Os.8787.1.S1_at11/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.1.S1_a_at11/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.2.S1_x_at8/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.2.S1_at2/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06150Os.40855.5.S1_x_at3/118+3391784..3392917hypothetical protein
LOC_Os08g06150Os.40360.1.S1_x_at2/118+3391784..3392917hypothetical protein
LOC_Os08g06160Os.40855.2.S1_x_at3/118+3394501..3395316hypothetical protein
LOC_Os08g06170Os.32498.1.S1_at11/118+3401932..3403624Reticuline oxidase precursor, putative, expressed
LOC_Os08g06180OsAffx.16849.1.S1_at11/118+3405986..3407050Reticuline oxidase precursor, putative
LOC_Os08g06190OsAffx.21988.1.S1_at11/118+3409139..3410827Reticuline oxidase precursor, putative, expressed
LOC_Os08g06200Os.33271.1.S1_a_at11/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.33271.2.S1_x_at10/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.26733.3.S1_x_at1/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06210Os.53407.1.S1_x_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.53407.1.S1_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.34200.1.S1_x_at6/118+3419392..3421715expressed protein
LOC_Os08g06210Os.7750.1.S1_at1/118+3419392..3421715expressed protein
LOC_Os08g06220Os.27552.2.S1_at11/118+3424561..3425998hypothetical protein
LOC_Os08g06230Os.27552.1.S1_a_at11/118+3425810..3431881Nucleolar GTP-binding protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32498.1.S1_at--664--2931Chr08:3402473..3402497 (25 bp)
AAGGCACCAATCTCGAGGCATGACA
LOC_Os08g06170
Os.32498.1.S1_at--290--8951Chr08:3402453..3402477 (25 bp)
TGACATGGTTGAGATCGCCCGATAC
LOC_Os08g06170
Os.32498.1.S1_at--206--9891Chr08:3402400..3402424 (25 bp)
TACTTGACCCTTATGGAGGTGCCAT
LOC_Os08g06170
Os.32498.1.S1_at--814--5251Chr08:3402370..3402394 (25 bp)
GAATCGGGAGTGACGCGACACCATT
LOC_Os08g06170
Os.32498.1.S1_at--850--511Chr08:3402340..3402364 (25 bp)
ATCGAGCTGGCATCCTCTACAGTAT
LOC_Os08g06170
Os.32498.1.S1_at--42--5611Chr08:3402295..3402319 (25 bp)
GACAATCGGATCAAGCTAGGGCTAA
LOC_Os08g06170
Os.32498.1.S1_at--614--6091Chr08:3402269..3402293 (25 bp)
GAGTACATCATATGGCTCCGATCGT
LOC_Os08g06170
Os.32498.1.S1_at--226--8331Chr08:3402256..3402280 (25 bp)
GGCTCCGATCGTTGTACACATACAT
LOC_Os08g06170
Os.32498.1.S1_at--901--2291Chr08:3402216..3402240 (25 bp)
AAAGGATCCCCGTGGTGCGTATGTC
LOC_Os08g06170
Os.32498.1.S1_at--1012--1731Chr08:3402187..3402211 (25 bp)
ACCTAGATCTAGACTTGGGCGCCAA
LOC_Os08g06170
Os.32498.1.S1_at--196--3131Chr08:3402077..3402101 (25 bp)
AATTTCAATCGGTTGGTCAGCACCA
LOC_Os08g06170
Target Sequence 
AAGGCACCAATCTCGAGGCATGACATGGTTGAGATCGCCCGATACCTATCAGCTGGACCACCAGGGTCCATCATACTTGA
CCCTTATGGAGGTGCCATGGCTCGAATCGGGAGTGACGCGACACCATTCCCACATCGAGCTGGCATCCTCTACAGTATTC
AGTATACTGTATATTGGGGACAATCGGATCAAGCTAGGGCTAATGAGTACATCATATGGCTCCGATCGTTGTACACATAC
ATGACCCCCCATGTGTCAAAGGATCCCCGTGGTGCGTATGTCAACTACCTAGATCTAGACTTGGGCGCCAACAACTGGAC
GCACCCCATAGGTGGATCATCTATGGAAGCAGTGGCGCGTGCGAGATCTTCTTGGGGTGCAGCATATTTTGGGAACAATT
TCAATCGGTTGGTCAGCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis