Browse Element(s) Details


Os.27552.1.S1_a_at

Description gb:AK067062.1
DB_XREF= gi:32977080
TID=Os.27552.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27552 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GTP-binding protein (P0498E12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092D16, full insert sequence.
FL= gb:AK067062.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0623011/11Nucleolar GTP-binding protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06170Os.32498.1.S1_at11/118+3401932..3403624Reticuline oxidase precursor, putative, expressed
LOC_Os08g06180OsAffx.16849.1.S1_at11/118+3405986..3407050Reticuline oxidase precursor, putative
LOC_Os08g06190OsAffx.21988.1.S1_at11/118+3409139..3410827Reticuline oxidase precursor, putative, expressed
LOC_Os08g06200Os.33271.1.S1_a_at11/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.33271.2.S1_x_at10/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.26733.3.S1_x_at1/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06210Os.53407.1.S1_x_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.53407.1.S1_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.34200.1.S1_x_at6/118+3419392..3421715expressed protein
LOC_Os08g06210Os.7750.1.S1_at1/118+3419392..3421715expressed protein
LOC_Os08g06220Os.27552.2.S1_at11/118+3424561..3425998hypothetical protein
LOC_Os08g06230Os.27552.1.S1_a_at11/118+3425810..3431881Nucleolar GTP-binding protein 1 containing protein, expressed
LOC_Os08g06240Os.11238.1.S1_at11/118+3432104..3435526Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g06250Os.7243.1.S1_s_at11/118+3437118..3440602GMFP4, putative, expressed
LOC_Os08g06260OsAffx.16851.1.S1_x_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06260OsAffx.16851.1.S1_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_x_at11/118+3443989..3444219hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_at11/118+3443989..3444219hypothetical protein
LOC_Os08g06280Os.40426.1.S1_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.12372.2.S1_x_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.12372.1.S1_s_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.40426.1.S1_x_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280OsAffx.12663.1.S1_at1/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.11239.1.S1_at1/118+3454421..3458475zinc finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27552.1.S1_a_at--815--6531Chr08:3426626..3426650 (25 bp)
GATTTATCTGAGGACTGCGGGACCT
LOC_Os08g06230
Os.27552.1.S1_a_at--240--4671Chr08:3426612..3426634 (23 bp)
GCGGGACCTCAGTGGCCGATCAGTA
LOC_Os08g06230
Os.27552.1.S1_a_at--878--8411Chr08:3426459..3426621 (25 bp)
GGCCGATCAGTACATCACATACAAG
LOC_Os08g06230
Os.27552.1.S1_a_at--428--2811Chr08:3426423..3426447 (25 bp)
AAGATTCGGTGATCGCTTGTGGCTT
LOC_Os08g06230
Os.27552.1.S1_a_at--502--1251Chr08:3426314..3426338 (25 bp)
AGATTCGGGCCAGAATGTGCCATCC
LOC_Os08g06230
Os.27552.1.S1_a_at--897--771Chr08:3426300..3426324 (25 bp)
ATGTGCCATCCGAGTATCTGTGCAG
LOC_Os08g06230
Os.27552.1.S1_a_at--721--9291Chr08:3426292..3426316 (25 bp)
TCCGAGTATCTGTGCAGGGCCAAGT
LOC_Os08g06230
Os.27552.1.S1_a_at--493--9891Chr08:3426122..3426146 (25 bp)
TACTAACCTCTCAGATGTCTCGGAT
LOC_Os08g06230
Os.27552.1.S1_a_at--469--8711Chr08:3426107..3426131 (25 bp)
TGTCTCGGATCAAAGCTGGCACAAT
LOC_Os08g06230
Os.27552.1.S1_a_at--963--8231Chr08:3426090..3426114 (25 bp)
GGCACAATCTATCAGGAAACCCAGA
LOC_Os08g06230
Os.27552.1.S1_a_at--910--6271Chr08:3426060..3426084 (25 bp)
GATGATAATGCTCCCGGGCAAACTT
LOC_Os08g06230
Target Sequence 
GATTTATCTGAGGACTGCGGGACCTCAGTGGCCGATCAGTACATCACATACAAGCATATAAAGGAAAGATTCGGTGATCG
CTTGTGGCTTGATGTTATATCCAAATCTGATCTTTTGGACAAGAAAACATCCTCAGAATTTGATGATGCTGATGATGAAG
TAGGGAGATACAGAAGATTCGGGCCAGAATGTGCCATCCGAGTATCTGTGCAGGGCCAAGTTGGAGTAAAAGAGCTAAAA
GAGAAGGTGCATCAGCTACTAACCTCTCAGATGTCTCGGATCAAAGCTGGCACAATCTATCAGGAAACCCAGAGAACGGA
TGATAATGCTCCCGGGCAAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27552.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis