Browse Element(s) Details


OsAffx.16851.1.S1_at

Description gb:NM_189055.1
DB_XREF= gi:34905193
GEN=P0498E12.15
TID=OsAffx.16851.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0498E12.15 (P0498E12.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0626011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06200Os.33271.1.S1_a_at11/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.33271.2.S1_x_at10/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.26733.3.S1_x_at1/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06210Os.53407.1.S1_x_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.53407.1.S1_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.34200.1.S1_x_at6/118+3419392..3421715expressed protein
LOC_Os08g06210Os.7750.1.S1_at1/118+3419392..3421715expressed protein
LOC_Os08g06220Os.27552.2.S1_at11/118+3424561..3425998hypothetical protein
LOC_Os08g06230Os.27552.1.S1_a_at11/118+3425810..3431881Nucleolar GTP-binding protein 1 containing protein, expressed
LOC_Os08g06240Os.11238.1.S1_at11/118+3432104..3435526Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g06250Os.7243.1.S1_s_at11/118+3437118..3440602GMFP4, putative, expressed
LOC_Os08g06260OsAffx.16851.1.S1_x_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06260OsAffx.16851.1.S1_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_x_at11/118+3443989..3444219hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_at11/118+3443989..3444219hypothetical protein
LOC_Os08g06280Os.40426.1.S1_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.12372.2.S1_x_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.12372.1.S1_s_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.40426.1.S1_x_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280OsAffx.12663.1.S1_at1/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.11239.1.S1_at1/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06290OsAffx.20854.1.S1_at7/118+3458359..3459958hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16851.1.S1_at--1003--2791Chr08:3441556..3441580 (25 bp)
AAGAGGCCGATTTGCGCCGACGTGT
LOC_Os08g06260
OsAffx.16851.1.S1_at--30--4051Chr08:3441563..3441587 (25 bp)
CGATTTGCGCCGACGTGTGCGCCTG
LOC_Os08g06260
OsAffx.16851.1.S1_at--651--10271Chr08:3441566..3441590 (25 bp)
TTTGCGCCGACGTGTGCGCCTGCTT
LOC_Os08g06260
OsAffx.16851.1.S1_at--875--4551Chr08:3441581..3441605 (25 bp)
GCGCCTGCTTCTTCACGTTGATCGG
LOC_Os08g06260
OsAffx.16851.1.S1_at--609--4471Chr08:3441583..3441607 (25 bp)
GCCTGCTTCTTCACGTTGATCGGCA
LOC_Os08g06260
OsAffx.16851.1.S1_at--816--9071Chr08:3441586..3441610 (25 bp)
TGCTTCTTCACGTTGATCGGCATCG
LOC_Os08g06260
OsAffx.16851.1.S1_at--344--3651Chr08:3441627..3441651 (25 bp)
CTTCGTCTTGGCCTACAAATGCTTC
LOC_Os08g06260
OsAffx.16851.1.S1_at--398--9411Chr08:3441629..3441653 (25 bp)
TCGTCTTGGCCTACAAATGCTTCCG
LOC_Os08g06260
OsAffx.16851.1.S1_at--348--7131Chr08:3441631..3441655 (25 bp)
GTCTTGGCCTACAAATGCTTCCGCA
LOC_Os08g06260
OsAffx.16851.1.S1_at--895--10811Chr08:3441634..3441658 (25 bp)
TTGGCCTACAAATGCTTCCGCACGA
LOC_Os08g06260
OsAffx.16851.1.S1_at--900--8411Chr08:3441636..3441660 (25 bp)
GGCCTACAAATGCTTCCGCACGACG
LOC_Os08g06260
Target Sequence 
AAGAGGCCGATTTGCGCCGACGTGTGCGCCTGCTTCTTCACGTTGATCGGCATCGCCGCCGTCGTCTTGGTCTTCGTCTT
GGCCTACAAATGCTTCCGCACGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis