Browse Element(s) Details


Os.11238.1.S1_at

Description gb:AK073617.1
DB_XREF= gi:32983640
TID=Os.11238.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0498E12.13 (P0498E12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051J11, full insert sequence.
FL= gb:AK103973.1 gb:AK073617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0624011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06190OsAffx.21988.1.S1_at11/118+3409139..3410827Reticuline oxidase precursor, putative, expressed
LOC_Os08g06200Os.33271.1.S1_a_at11/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.33271.2.S1_x_at10/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.26733.3.S1_x_at1/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06210Os.53407.1.S1_x_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.53407.1.S1_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.34200.1.S1_x_at6/118+3419392..3421715expressed protein
LOC_Os08g06210Os.7750.1.S1_at1/118+3419392..3421715expressed protein
LOC_Os08g06220Os.27552.2.S1_at11/118+3424561..3425998hypothetical protein
LOC_Os08g06230Os.27552.1.S1_a_at11/118+3425810..3431881Nucleolar GTP-binding protein 1 containing protein, expressed
LOC_Os08g06240Os.11238.1.S1_at11/118+3432104..3435526Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g06250Os.7243.1.S1_s_at11/118+3437118..3440602GMFP4, putative, expressed
LOC_Os08g06260OsAffx.16851.1.S1_x_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06260OsAffx.16851.1.S1_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_x_at11/118+3443989..3444219hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_at11/118+3443989..3444219hypothetical protein
LOC_Os08g06280Os.40426.1.S1_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.12372.2.S1_x_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.12372.1.S1_s_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.40426.1.S1_x_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280OsAffx.12663.1.S1_at1/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.11239.1.S1_at1/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06290OsAffx.20854.1.S1_at7/118+3458359..3459958hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11238.1.S1_at--493--6311Chr08:3432981..3433005 (25 bp)
GATGACCGGGCATTGCTCAACGCGC
LOC_Os08g06240
Os.11238.1.S1_at--600--9711Chr08:3433105..3433129 (25 bp)
TCAAGCGCGATTTCCGGAGCAGCAA
LOC_Os08g06240
Os.11238.1.S1_at--385--2931Chr08:3433128..3433152 (25 bp)
AAGGCAGCATCGGAGGCAGCTCCAT
LOC_Os08g06240
Os.11238.1.S1_at--575--5131Chr08:3433157..3433181 (25 bp)
GCAAATGCTACCTAGTTGCCTGCAA
LOC_Os08g06240
Os.11238.1.S1_at--960--1231Chr08:3433170..3433194 (25 bp)
AGTTGCCTGCAATTCTTCTTTGAGA
LOC_Os08g06240
Os.11238.1.S1_at--895--5531Chr08:3435238..3435262 (25 bp)
GAAACGAAAAGCCATTTGCTCCGGG
LOC_Os08g06240
Os.11238.1.S1_at--594--1651Chr08:3435410..3435434 (25 bp)
AGCCCCTTGTTTGGTTGTAGTGTCA
LOC_Os08g06240
Os.11238.1.S1_at--1128--6631Chr08:3435423..3435447 (25 bp)
GTTGTAGTGTCACTCAAGCCTCCAT
LOC_Os08g06240
Os.11238.1.S1_at--237--4471Chr08:3435440..3435464 (25 bp)
GCCTCCATCCAACATGTGTTAACAT
LOC_Os08g06240
Os.11238.1.S1_at--1015--10591Chr08:3435476..3435500 (25 bp)
TTCTGCTCATCTTTTGATAGGGCTA
LOC_Os08g06240
Os.11238.1.S1_at--394--7591Chr08:3435495..3435519 (25 bp)
GGGCTAATACGATACACACTGTTCT
LOC_Os08g06240
Target Sequence 
GATGACCGGGCATTGCTCAACGCGCTCAAGGAGTTCCCCAAGGACACGGCGATGAGGTGGGAGAAGGTGGCGGTGGCGGT
GCCCGGGAAGACGAAGGCAGCTTGCANGAAGAGGGTCACCGAGCTCAAGCGCGATTTCCGGAGCAGCAAGGCAGCATCGG
AGGCAGCTCCATAGCTGCAAATGCTACCTAGTTGCCTGCAATTCTTCTTTGAGAGTAAGGTTTTAGACANNGAGATTTAC
CATGATGAAACGAGAAACGAAAAGCCATTTGCTCCGGGGTGATGCCAAATGAAGGAGACAACTGAATTATAGAACAGATG
GTGTACTTTTATTGTTTTGAGAAAGGTCAGGAAAAAAATCCTTGATACATGAAGATACTGGGACACACGAAAACAAACAG
ATTGCCAGATTGTAAAAGAAATTGTAGCCCCTTGTTTGGTTGTAGTGTCACTCAAGCCTCCATCCAACATGTGTTAACAT
TACNTGACTGTTTCTGCTCATCTTTTGATAGGGCTAATACGATACACACTGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis