Browse Element(s) Details


OsAffx.21987.1.S1_at

Description tigr:9636.m00560
TID=OsAffx.21987.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0627011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06210Os.53407.1.S1_x_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.53407.1.S1_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.34200.1.S1_x_at6/118+3419392..3421715expressed protein
LOC_Os08g06210Os.7750.1.S1_at1/118+3419392..3421715expressed protein
LOC_Os08g06220Os.27552.2.S1_at11/118+3424561..3425998hypothetical protein
LOC_Os08g06230Os.27552.1.S1_a_at11/118+3425810..3431881Nucleolar GTP-binding protein 1 containing protein, expressed
LOC_Os08g06240Os.11238.1.S1_at11/118+3432104..3435526Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g06250Os.7243.1.S1_s_at11/118+3437118..3440602GMFP4, putative, expressed
LOC_Os08g06260OsAffx.16851.1.S1_x_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06260OsAffx.16851.1.S1_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_x_at11/118+3443989..3444219hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_at11/118+3443989..3444219hypothetical protein
LOC_Os08g06280Os.40426.1.S1_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.12372.2.S1_x_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.12372.1.S1_s_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.40426.1.S1_x_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280OsAffx.12663.1.S1_at1/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.11239.1.S1_at1/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06290OsAffx.20854.1.S1_at7/118+3458359..3459958hypothetical protein
LOC_Os08g06300Os.43567.1.S1_x_at7/118+3467543..3469395transposon protein, putative, unclassified
LOC_Os08g06300Os.38172.1.S1_x_at3/118+3467543..3469395transposon protein, putative, unclassified
LOC_Os08g06300Os.53217.1.S1_x_at2/118+3467543..3469395transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21987.1.S1_at--755--1491Chr08:3444097..3444121 (25 bp)
AGCAACAGCCCGATGGACGCCGACT
LOC_Os08g06270
OsAffx.21987.1.S1_at--889--5131Chr08:3444098..3444122 (25 bp)
GCAACAGCCCGATGGACGCCGACTT
LOC_Os08g06270
OsAffx.21987.1.S1_at--61--2492Chr08:3444100..3444124 (25 bp)
AACAGCCCGATGGACGCCGACTTGT
LOC_Os08g06270
OsAffx.21987.1.S1_at--853--2151Chr08:3444101..3444125 (25 bp)
ACAGCCCGATGGACGCCGACTTGTG
LOC_Os08g06270
OsAffx.21987.1.S1_at--37--3371Chr08:3444102..3444126 (25 bp)
CAGCCCGATGGACGCCGACTTGTGC
LOC_Os08g06270
OsAffx.21987.1.S1_at--1078--4051Chr08:3444107..3444131 (25 bp)
CGATGGACGCCGACTTGTGCTGCTG
LOC_Os08g06270
OsAffx.21987.1.S1_at--929--831Chr08:3444109..3444133 (25 bp)
ATGGACGCCGACTTGTGCTGCTGCT
LOC_Os08g06270
OsAffx.21987.1.S1_at--969--8531Chr08:3444110..3444134 (25 bp)
TGGACGCCGACTTGTGCTGCTGCTC
LOC_Os08g06270
OsAffx.21987.1.S1_at--465--4771Chr08:3444125..3444149 (25 bp)
GCTGCTGCTCCTGCGCGTTGATCGG
LOC_Os08g06270
OsAffx.21987.1.S1_at--185--9111Chr08:3444130..3444154 (25 bp)
TGCTCCTGCGCGTTGATCGGCATCG
LOC_Os08g06270
OsAffx.21987.1.S1_at--104--4131Chr08:3444165..3444189 (25 bp)
CGCGGCCTCGCTCTTGGCCTTCAAA
LOC_Os08g06270
Target Sequence 
AGCAACAGCCCGATGGACGCCGACTTGTGCTGCTGCTCCTGCGCGTTGATCGGCATCGCCGCCACCGTCGCGGCCTCGCT
CTTGGCCTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis