Browse Element(s) Details


Os.40426.1.S1_x_at

Description gb:AK059153.1
DB_XREF= gi:32969171
TID=Os.40426.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40426 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-B12, full insert sequence.
FL= gb:AK059153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0628011/11zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06230Os.27552.1.S1_a_at11/118+3425810..3431881Nucleolar GTP-binding protein 1 containing protein, expressed
LOC_Os08g06240Os.11238.1.S1_at11/118+3432104..3435526Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g06250Os.7243.1.S1_s_at11/118+3437118..3440602GMFP4, putative, expressed
LOC_Os08g06260OsAffx.16851.1.S1_x_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06260OsAffx.16851.1.S1_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_x_at11/118+3443989..3444219hypothetical protein
LOC_Os08g06270OsAffx.21987.1.S1_at11/118+3443989..3444219hypothetical protein
LOC_Os08g06280Os.40426.1.S1_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.12372.2.S1_x_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.12372.1.S1_s_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.40426.1.S1_x_at11/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280OsAffx.12663.1.S1_at1/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06280Os.11239.1.S1_at1/118+3454421..3458475zinc finger protein, putative, expressed
LOC_Os08g06290OsAffx.20854.1.S1_at7/118+3458359..3459958hypothetical protein
LOC_Os08g06300Os.43567.1.S1_x_at7/118+3467543..3469395transposon protein, putative, unclassified
LOC_Os08g06300Os.38172.1.S1_x_at3/118+3467543..3469395transposon protein, putative, unclassified
LOC_Os08g06300Os.53217.1.S1_x_at2/118+3467543..3469395transposon protein, putative, unclassified
LOC_Os08g06310OsAffx.22848.4.S1_at2/118+3471716..3477665retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g06310OsAffx.22848.4.S1_x_at1/118+3471716..3477665retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0000303biological_processresponse to superoxide
GO:0006917biological_processinduction of apoptosis
GO:0008219biological_processcell death
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40426.1.S1_x_at--238--5471Chr08:3454983..3455007 (25 bp)
GAACTGCCGTATGCTGCTCATGTAC
LOC_Os08g06280
Os.40426.1.S1_x_at--389--1731Chr08:3454960..3454984 (25 bp)
ACCAGTATGGCGCAAGGTCTGTCAA
LOC_Os08g06280
Os.40426.1.S1_x_at--293--7811Chr08:3454945..3454969 (25 bp)
GGTCTGTCAAATGCGCAGTCTGCAA
LOC_Os08g06280
Os.40426.1.S1_x_at--553--10531Chr08:3454894..3454918 (25 bp)
TTCATCAACAGGACACTTCAATTTC
LOC_Os08g06280
Os.40426.1.S1_x_at--257--9771Chr08:3454820..3454844 (25 bp)
TAATGGCTAATATTGCACTGCAACC
LOC_Os08g06280
Os.40426.1.S1_x_at--919--10351Chr08:3454790..3454814 (25 bp)
TTTTTCATGATGTGACCTTAGTTGA
LOC_Os08g06280
Os.40426.1.S1_x_at--483--8991Chr08:3454748..3454772 (25 bp)
TGAATCTTTTCAGGCCTCACCTGGT
LOC_Os08g06280
Os.40426.1.S1_x_at--37--7851Chr08:3454726..3454750 (25 bp)
GGTACAGACCAGAAGCCCAGCAGCT
LOC_Os08g06280
Os.40426.1.S1_x_at--520--3371Chr08:3454573..3454597 (25 bp)
CACCTTCCTTCCTTGGATATGGAGA
LOC_Os08g06280
Os.40426.1.S1_x_at--248--1731Chr08:3454515..3454539 (25 bp)
ACCTAGTGCTCAAAATTCGTCGAAT
LOC_Os08g06280
Os.40426.1.S1_x_at--939--10611Chr08:3454500..3454524 (25 bp)
TTCGTCGAATCGTCTGTATGACCGA
LOC_Os08g06280
Target Sequence 
GAACTGCCGTATGCTGCTCATGTACCAGTATGGCGCAAGGTCTGTCAAATGCGCAGTCTGCAATTTTGTGACATCAGTTG
GGGTAAGTGTTCATCAACAGGACACTTCAATTTCATATTTAGTTCCTTTATCTGAAAACATTCAATTTTACAGTAGCATC
ATCTAATGGCTAATATTGCACTGCAACCTGATTTTTTTCATGATGTGACCTTAGTTGAAGAGTGTGTTTTTTTTCTGAAT
CTTTTCAGGCCTCACCTGGTACAGACCAGAAGCCCAGCAGCTGAACTGCTGAAGTGCCATAAATATTCNAGNAAANAGNA
GNCTTCNTCAAACCGNATNGCTTTGAGNTGCACATGTATAGAGTTCTTNCCCTGAAGCATTTTTTTTCTNCCNTTTNTTT
ATCTNCCCTTTNCCCCCCAATTTCCACCTTCCTTCCTTGGATATGGAGAGAGCCTGCGGAATAAATGAGAGTTTTGCTAA
ATACCTAGTGCTCAAAATTCGTCGAATCGTCTGTATGACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40426.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis