Browse Element(s) Details


Os.33271.1.S1_a_at

Description gb:AK060393.1
DB_XREF= gi:32970411
TID=Os.33271.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.33271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0498E12.9 (P0498E12.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A11, full insert sequence.
FL= gb:AK101134.1 gb:AK060393.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0620011/11Stomatin-like protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06150Os.40855.5.S1_x_at3/118+3391784..3392917hypothetical protein
LOC_Os08g06150Os.40360.1.S1_x_at2/118+3391784..3392917hypothetical protein
LOC_Os08g06160Os.40855.2.S1_x_at3/118+3394501..3395316hypothetical protein
LOC_Os08g06170Os.32498.1.S1_at11/118+3401932..3403624Reticuline oxidase precursor, putative, expressed
LOC_Os08g06180OsAffx.16849.1.S1_at11/118+3405986..3407050Reticuline oxidase precursor, putative
LOC_Os08g06190OsAffx.21988.1.S1_at11/118+3409139..3410827Reticuline oxidase precursor, putative, expressed
LOC_Os08g06200Os.33271.1.S1_a_at11/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.33271.2.S1_x_at10/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.26733.3.S1_x_at1/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06210Os.53407.1.S1_x_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.53407.1.S1_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.34200.1.S1_x_at6/118+3419392..3421715expressed protein
LOC_Os08g06210Os.7750.1.S1_at1/118+3419392..3421715expressed protein
LOC_Os08g06220Os.27552.2.S1_at11/118+3424561..3425998hypothetical protein
LOC_Os08g06230Os.27552.1.S1_a_at11/118+3425810..3431881Nucleolar GTP-binding protein 1 containing protein, expressed
LOC_Os08g06240Os.11238.1.S1_at11/118+3432104..3435526Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g06250Os.7243.1.S1_s_at11/118+3437118..3440602GMFP4, putative, expressed
LOC_Os08g06260OsAffx.16851.1.S1_x_at11/118+3441439..3441675hypothetical protein
LOC_Os08g06260OsAffx.16851.1.S1_at11/118+3441439..3441675hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33271.1.S1_a_at--205--9611Chr08:3417775..3417799 (25 bp)
TCATCGCCCAGTCTCTCCAGATATA
LOC_Os08g06200
Os.33271.1.S1_a_at--1096--1151Chr08:3417784..3417808 (25 bp)
AGTCTCTCCAGATATACAAGCACAT
LOC_Os08g06200
Os.33271.1.S1_a_at--826--10171Chr08:3417796..3417820 (25 bp)
TATACAAGCACATCTGCCAGACCAA
LOC_Os08g06200
Os.33271.1.S1_a_at--453--2131Chr08:3417820..3417844 (25 bp)
ACAGCTTGAAGAGTGGGAAGTACCT
LOC_Os08g06200
Os.33271.1.S1_a_at--79--1111Chr08:3417831..3417855 (25 bp)
AGTGGGAAGTACCTCACAGATGCTC
LOC_Os08g06200
Os.33271.1.S1_a_at--29--5831Chr08:3417897..3417921 (25 bp)
GACCTACCTTCTCTGAGCAGCGGGA
LOC_Os08g06200
Os.33271.1.S1_a_at--441--3651Chr08:3417904..3417928 (25 bp)
CTTCTCTGAGCAGCGGGATGCCGTC
LOC_Os08g06200
Os.33271.1.S1_a_at--577--691Chr08:3417943..3417967 (25 bp)
ATGACCATGACAAGACTTTCTCCCT
LOC_Os08g06200
Os.33271.1.S1_a_at--976--671Chr08:3417949..3417973 (25 bp)
ATGACAAGACTTTCTCCCTGCAGCG
LOC_Os08g06200
Os.33271.1.S1_a_at--1048--9031Chr08:3417967..3417991 (25 bp)
TGCAGCGCCGCAACAAGGACAAGCA
LOC_Os08g06200
Os.33271.1.S1_a_at--251--4571Chr08:3417971..3417995 (25 bp)
GCGCCGCAACAAGGACAAGCACTGA
LOC_Os08g06200
Target Sequence 
TCATCGCCCAGTCTCTCCAGATATACAAGCACATCTGCCAGACCAACAGCTTGAAGAGTGGGAAGTACCTCACAGATGCT
CNAGAGGAGACNGAACNGGAGGAAGAAGAGTTGGACTCTACNGACCTACCTTCTCTGAGCAGCGGGATGCCGTCCCCCGA
CNTGCCAGATGACCATGACAAGACTTTCTCCCTGCAGCGCCGCAACAAGGACAAGCACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33271.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis