Browse Element(s) Details


OsAffx.16849.1.S1_at

Description gb:NM_189047.1
DB_XREF= gi:34905177
GEN=P0498E12.7
TID=OsAffx.16849.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative berberine bridge enzyme (P0498E12.7), mRNA.
PROD=putative berberine bridge enzyme
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0618011/11Reticuline oxidase precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06140Os.8787.1.S1_at11/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.1.S1_a_at11/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.2.S1_x_at8/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.2.S1_at2/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06150Os.40855.5.S1_x_at3/118+3391784..3392917hypothetical protein
LOC_Os08g06150Os.40360.1.S1_x_at2/118+3391784..3392917hypothetical protein
LOC_Os08g06160Os.40855.2.S1_x_at3/118+3394501..3395316hypothetical protein
LOC_Os08g06170Os.32498.1.S1_at11/118+3401932..3403624Reticuline oxidase precursor, putative, expressed
LOC_Os08g06180OsAffx.16849.1.S1_at11/118+3405986..3407050Reticuline oxidase precursor, putative
LOC_Os08g06190OsAffx.21988.1.S1_at11/118+3409139..3410827Reticuline oxidase precursor, putative, expressed
LOC_Os08g06200Os.33271.1.S1_a_at11/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.33271.2.S1_x_at10/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06200Os.26733.3.S1_x_at1/118+3414227..3418369Stomatin-like protein 2, putative, expressed
LOC_Os08g06210Os.53407.1.S1_x_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.53407.1.S1_at10/118+3419392..3421715expressed protein
LOC_Os08g06210Os.34200.1.S1_x_at6/118+3419392..3421715expressed protein
LOC_Os08g06210Os.7750.1.S1_at1/118+3419392..3421715expressed protein
LOC_Os08g06220Os.27552.2.S1_at11/118+3424561..3425998hypothetical protein
LOC_Os08g06230Os.27552.1.S1_a_at11/118+3425810..3431881Nucleolar GTP-binding protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16849.1.S1_at--843--1931Chr08:3406537..3406561 (25 bp)
ACGGCCAAGTTTGCTAGGCTCAACT
LOC_Os08g06180
OsAffx.16849.1.S1_at--362--9711Chr08:3406518..3406542 (25 bp)
TCAACTCAACCGCTGATCTTACTAA
LOC_Os08g06180
OsAffx.16849.1.S1_at--1044--1471Chr08:3406462..3406486 (25 bp)
AGCAAGTCAGACTACGTCCATTCAC
LOC_Os08g06180
OsAffx.16849.1.S1_at--460--5231Chr08:3406405..3406429 (25 bp)
GAATATCTATCGAACGGTCCACAAG
LOC_Os08g06180
OsAffx.16849.1.S1_at--841--7251Chr08:3406389..3406413 (25 bp)
GTCCACAAGGGTTCATCCAGCTTAA
LOC_Os08g06180
OsAffx.16849.1.S1_at--968--1531Chr08:3406371..3406395 (25 bp)
AGCTTAACCCTTATGGCGGCGCAAT
LOC_Os08g06180
OsAffx.16849.1.S1_at--85--7651Chr08:3406336..3406360 (25 bp)
GGGAGCTCTGAGTTACCATTTCCAT
LOC_Os08g06180
OsAffx.16849.1.S1_at--768--9591Chr08:3406219..3406243 (25 bp)
TCATTCTATGCGTATATGGCTCCCC
LOC_Os08g06180
OsAffx.16849.1.S1_at--789--2371Chr08:3406184..3406208 (25 bp)
AAACCCTCTAGCTGCGTATGTGAAC
LOC_Os08g06180
OsAffx.16849.1.S1_at--953--2531Chr08:3406162..3406186 (25 bp)
AACTACTTGGACCTTGATCTGGGCA
LOC_Os08g06180
OsAffx.16849.1.S1_at--363--491Chr08:3406146..3406170 (25 bp)
ATCTGGGCACGAACACCTGGAGGAA
LOC_Os08g06180
Target Sequence 
ACGGCCAAGTTTGCTAGGCTCAACTCAACCGCTGATCTTACTAATAGACGGCTTGGGATAAAATACTACTCTAAGAGCAA
GTCAGACTACGTCCATTCACCAATCTCGATGCAAGACACAATCAAGATCATCGAATATCTATCGAACGGTCCACAAGGGT
TCATCCAGCTTAACCCTTATGGCGGCGCAATGGCTCGAATAGGGAGCTCTGAGTTACCATTTCCATACCGGGCTGGATAC
TTGTATAGCATCGAATACAATGTGTCCTGGAAGGCGTCGGATAATGATCGAGCAGATGAGTTCATTCGATGGTTGAGATC
ATTCTATGCGTATATGGCTCCCCACGTGTCTAAAAACCCTCTAGCTGCGTATGTGAACTACTTGGACCTTGATCTGGGCA
CGAACACCTGGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis