Browse Element(s) Details


Os.8787.2.S1_at

Description gb:NM_189045.1
DB_XREF= gi:34905173
GEN=P0498E12.3
TID=Os.8787.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0498E12.3 (P0498E12.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0498E12.3 (P0498E12.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g061402/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06110Os.10901.1.S1_a_at11/118+3359878..3367064myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g06110OsAffx.13369.1.S1_at1/118+3359878..3367064myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g06120OsAffx.29062.1.S1_at11/118+3371125..3371988B3 DNA binding domain containing protein
LOC_Os08g06120OsAffx.29062.1.S1_x_at11/118+3371125..3371988B3 DNA binding domain containing protein
LOC_Os08g06130Os.35855.2.S1_x_at11/118+3376195..3380659expressed protein
LOC_Os08g06130Os.35855.1.S1_at10/118+3376195..3380659expressed protein
LOC_Os08g06140Os.8787.1.S1_at11/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.1.S1_a_at11/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.2.S1_x_at8/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.2.S1_at2/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06150Os.40855.5.S1_x_at3/118+3391784..3392917hypothetical protein
LOC_Os08g06150Os.40360.1.S1_x_at2/118+3391784..3392917hypothetical protein
LOC_Os08g06160Os.40855.2.S1_x_at3/118+3394501..3395316hypothetical protein
LOC_Os08g06170Os.32498.1.S1_at11/118+3401932..3403624Reticuline oxidase precursor, putative, expressed
LOC_Os08g06180OsAffx.16849.1.S1_at11/118+3405986..3407050Reticuline oxidase precursor, putative
LOC_Os08g06190OsAffx.21988.1.S1_at11/118+3409139..3410827Reticuline oxidase precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8787.2.S1_at--1003--6731Chr08:3382898..3383337 (25 bp)
GTTCTTGCTTCACATATGTTAGTAG
LOC_Os08g06140
Os.8787.2.S1_at--586--9071Chr08:3382893..3383332 (25 bp)
TGCTTCACATATGTTAGTAGCCACA
LOC_Os08g06140
Os.8787.2.S1_at--893--7031Chr08:3382444..3382742 (25 bp)
GTAAGTCAGGATACTTTGAAAGAGA
NONE
Os.8787.2.S1_at--1018--5991Chr08:3382421..3382445 (25 bp)
GAGAGTTGAGCGAAAGTTGAAAAAA
NONE
Os.8787.2.S1_at--150--5451Chr08:3382403..3382427 (25 bp)
GAAAAAAGCTTCATGCAAACGTGAG
NONE
Os.8787.2.S1_at--253--2331Chr08:3382399..3382423 (25 bp)
AAAGCTTCATGCAAACGTGAGGATG
NONE
Os.8787.2.S1_at--439--651Chr08:3382391..3382415 (25 bp)
ATGCAAACGTGAGGATGGTCACCTG
NONE
Os.8787.2.S1_at--30--8591Chr08:3382376..3382400 (25 bp)
TGGTCACCTGCTGCCTAGTGGATTA
NONE
Os.8787.2.S1_at--940--9671Chr08:3382373..3382397 (25 bp)
TCACCTGCTGCCTAGTGGATTATGG
NONE
Os.8787.2.S1_at--872--4771Chr08:3382367..3382391 (25 bp)
GCTGCCTAGTGGATTATGGGCCAAA
NONE
Os.8787.2.S1_at--594--6551Chr08:3382356..3382380 (25 bp)
GATTATGGGCCAAAGCTGATTTTGA
NONE
Target Sequence 
GTTCTTGCTTCACATATGTTAGTAGCCACATACCCTAGTTGTTCAGCAGTTGTAAGTCAGGATACTTTGAAAGAGAGAGT
TGAGCGAAAGTTGAAAAAAGCTTCATGCAAACGTGAGGATGGTCACCTGCTGCCTAGTGGATTATGGGCCAAAGCTGATT
TTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8787.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis