Browse Element(s) Details


OsAffx.29062.1.S1_x_at

Description tigr:9636.m00543
TID=OsAffx.29062.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=B3 DNA binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0612011/11B3 DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06110Os.10901.1.S1_a_at11/118+3359878..3367064myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g06110OsAffx.13369.1.S1_at1/118+3359878..3367064myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g06120OsAffx.29062.1.S1_at11/118+3371125..3371988B3 DNA binding domain containing protein
LOC_Os08g06120OsAffx.29062.1.S1_x_at11/118+3371125..3371988B3 DNA binding domain containing protein
LOC_Os08g06130Os.35855.2.S1_x_at11/118+3376195..3380659expressed protein
LOC_Os08g06130Os.35855.1.S1_at10/118+3376195..3380659expressed protein
LOC_Os08g06140Os.8787.1.S1_at11/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.1.S1_a_at11/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.2.S1_x_at8/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.2.S1_at2/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06150Os.40855.5.S1_x_at3/118+3391784..3392917hypothetical protein
LOC_Os08g06150Os.40360.1.S1_x_at2/118+3391784..3392917hypothetical protein
LOC_Os08g06160Os.40855.2.S1_x_at3/118+3394501..3395316hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29062.1.S1_x_at--667--1491Chr08:3371396..3371420 (25 bp)
AGCACGCGGAGAGGTTCTTCCCGGC
LOC_Os08g06120
OsAffx.29062.1.S1_x_at--271--1851Chr08:3371434..3371458 (25 bp)
ACGCAGCTGTGCTTCGAGGACCGCG
LOC_Os08g06120
OsAffx.29062.1.S1_x_at--550--4211Chr08:3371756..3371780 (25 bp)
CCGCAGCAACGATGTTCTTGGACAC
LOC_Os08g06120
OsAffx.29062.1.S1_x_at--1147--1871Chr08:3371764..3371788 (25 bp)
ACGATGTTCTTGGACACGGTGGCGC
LOC_Os08g06120
OsAffx.29062.1.S1_x_at--708--731Chr08:3371767..3371791 (25 bp)
ATGTTCTTGGACACGGTGGCGCCCG
LOC_Os08g06120
OsAffx.29062.1.S1_x_at--664--8391Chr08:3371825..3371849 (25 bp)
GGCCCTCCGGACAGAGGAGCTTCAG
LOC_Os08g06120
OsAffx.29062.1.S1_x_at--670--971Chr08:3371839..3371863 (25 bp)
AGGAGCTTCAGGCTCTTCGGCGTCA
LOC_Os08g06120
OsAffx.29062.1.S1_x_at--1064--911Chr08:3371848..3371872 (25 bp)
AGGCTCTTCGGCGTCAATGTCGAGT
LOC_Os08g06120
OsAffx.29062.1.S1_x_at--290--3631Chr08:3371853..3371877 (25 bp)
CTTCGGCGTCAATGTCGAGTGCGGC
LOC_Os08g06120
OsAffx.29062.1.S1_x_at--792--4091Chr08:3371919..3371943 (25 bp)
CGACGTCGACGACGGTGATCATCGC
LOC_Os08g06120
OsAffx.29062.1.S1_x_at--263--7411Chr08:3371933..3371957 (25 bp)
GTGATCATCGCCGAGGTGAAGAAAT
LOC_Os08g06120
Target Sequence 
AGCACGCGGAGAGGTTCTTCCCGGCGGCGGCCGCCGGCACGCAGCTGTGCTTCGAGGACCGCGCCGGGACGCCATGGCGG
TTCCGCTACTCCTACTGGGGGAGCAGCCAGAGCTACGTGATGACCAAGGGGTGGAGCCGCTTCGTCCGCGCCGCCCGCCT
CTCCGCCGGCGACACCGTCTCCTTCTCCCGCGCCGCCGACGGCCGCTACTTCATCGACTACCGCCACTGCCACCGCCACG
GCGGCCGCGACATCAGCTTCGCCTCCGCCGCCACCGCCATGCCGGCGGCGGCGTGGCCGCTCTTCGGCCGGGTGCAAACG
GCGGCGCCGGTCAGCTACGGCGGCGGCCATGGGAGTGCGGCCGCAGCAACGATGTTCTTGGACACGGTGGCGCCCGTCGC
CGCCGCCGGCGGCCACCGCGGCGAGGTGGGGCCCTCCGGACAGAGGAGCTTCAGGCTCTTCGGCGTCAATGTCGAGTGCG
GCGGCGACGTCGACGCGGCGGCGGAAGAGGAGGATGCCGACGACGACGTCGACGACGGTGATCATCGCCGAGGTGAAGAA
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29062.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis