Browse Element(s) Details


Os.35855.2.S1_x_at

Description gb:CA766264
DB_XREF= gi:27548055
DB_XREF=AF53-Rpf_10_M15_T7_056.ab1
CLONE=C0003759
TID=Os.35855.2
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35855 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0498E12.2 (P0498E12.2), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0613011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06110Os.10901.1.S1_a_at11/118+3359878..3367064myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g06110OsAffx.13369.1.S1_at1/118+3359878..3367064myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os08g06120OsAffx.29062.1.S1_at11/118+3371125..3371988B3 DNA binding domain containing protein
LOC_Os08g06120OsAffx.29062.1.S1_x_at11/118+3371125..3371988B3 DNA binding domain containing protein
LOC_Os08g06130Os.35855.2.S1_x_at11/118+3376195..3380659expressed protein
LOC_Os08g06130Os.35855.1.S1_at10/118+3376195..3380659expressed protein
LOC_Os08g06140Os.8787.1.S1_at11/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.1.S1_a_at11/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.2.S1_x_at8/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06140Os.8787.2.S1_at2/118+3382674..3387082No apical meristem protein, expressed
LOC_Os08g06150Os.40855.5.S1_x_at3/118+3391784..3392917hypothetical protein
LOC_Os08g06150Os.40360.1.S1_x_at2/118+3391784..3392917hypothetical protein
LOC_Os08g06160Os.40855.2.S1_x_at3/118+3394501..3395316hypothetical protein
LOC_Os08g06170Os.32498.1.S1_at11/118+3401932..3403624Reticuline oxidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35855.2.S1_x_at--257--5591Chr08:3376914..3376938 (25 bp)
GAAATCCTTCTTTCCAGGCATGTGA
LOC_Os08g06130
Os.35855.2.S1_x_at--1030--10431Chr08:3376888..3376912 (25 bp)
TTAGGTGCAGGTCCAAGTAATTCTT
LOC_Os08g06130
Os.35855.2.S1_x_at--366--10111Chr08:3376864..3376888 (25 bp)
TATGGAGCTGCCATATCTTACCCAC
LOC_Os08g06130
Os.35855.2.S1_x_at--660--3251Chr08:3376839..3376863 (25 bp)
CAACTCTGAGTTTTCCTAAGGGTGA
LOC_Os08g06130
Os.35855.2.S1_x_at--53--5831Chr08:3376780..3376804 (25 bp)
GACCTCCTTTACACTGGTGATTGCA
LOC_Os08g06130
Os.35855.2.S1_x_at--216--351Chr08:3376743..3376767 (25 bp)
ATAACAGTGTGCCTAGCTGCTCTGC
LOC_Os08g06130
Os.35855.2.S1_x_at--1057--4411Chr08:3376707..3376731 (25 bp)
GCCATCCTACTCGACCGAATAATTT
LOC_Os08g06130
Os.35855.2.S1_x_at--497--951Chr08:3376656..3376680 (25 bp)
AGGAAACTGGCTTGCATCATCATGC
LOC_Os08g06130
Os.35855.2.S1_x_at--487--9351Chr08:3376614..3376638 (25 bp)
TCGCACCGAGCAGAGTTCACAGGGA
LOC_Os08g06130
Os.35855.2.S1_x_at--234--1511Chr08:3376538..3376562 (25 bp)
AGCAGACGGCATTTTGAGTGGCAAT
LOC_Os08g06130
Os.35855.2.S1_x_at--794--9491Chr08:3376445..3376469 (25 bp)
TCTGCCAGCCAGATTGCTACTTAAT
LOC_Os08g06130
Target Sequence 
GAAATCCTTCTTTCCAGGCATGTGATTTAGGTGCAGGTCCAAGTAATTCTTATGGAGCTGCCATATCTTACCCACCAACT
CTGAGTTTTCCTAAGGGTGATTCTACTGAAGAGACATCAAGAGCAAGGAACACTGACCTCCTTTACACTGGTGATTGCAT
CCGGTTAGGAGATAACAGTGTGCCTAGCTGCTCTGCAAGCACCATCAGCCATCCTACTCGACCGAATAATTTTCAGGGTG
ACCTTTTAACAGGCTTGGAGGAAACTGGCTTGCATCATCATGCTCAGCCAGTACCGCAACTCGCACCGAGCAGAGTTCAC
AGGGAACCGAGAATAAGCACTATGGATGNAAGCGTCAGGCCACTCATGCTTCACCGGAGCAGACGGCATTTTGAGTGGCA
ATTCTGAATATGGCTTGTCATCAGATTGGGAGCATGTTCTGAAGGAAGAAATCGGCTGGAGCTGAAGGGATCTGCCAGCC
AGATTGCTACTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35855.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis