Browse Element(s) Details


Os.10924.1.S1_at

Description gb:AK065972.1
DB_XREF= gi:32975990
TID=Os.10924.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10924 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049G06, full insert sequence.
FL= gb:AK065972.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1396010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13920Os.26886.3.S1_x_at7/113+7526294..7532544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13920Os.26886.1.S1_x_at5/113+7526294..7532544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13920OsAffx.20257.1.S1_at1/113+7526294..7532544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13920Os.47130.4.A1_x_at1/113+7526294..7532544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13930OsAffx.3233.1.S1_at11/113+7538631..7540973subtilisin proteinase, putative, expressed
LOC_Os03g13940NANA3+7542916..7543564transposon protein, putative, unclassified
LOC_Os03g13950Os.12975.1.S1_at11/113+7544375..7546827Actin-depolymerizing factor, putative, expressed
LOC_Os03g13960Os.10924.1.S1_at10/113+7552393..7556481expressed protein
LOC_Os03g13970OsAffx.12848.1.S1_x_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13970Os.4677.1.S1_a_at11/113+7558499..7562799Ubiquitin interaction motif family protein, expressed
LOC_Os03g13984OsAffx.3235.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g13984OsAffx.12849.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g14000Os.7524.1.S1_at11/113+7570923..7576500Acyl CoA binding protein, expressed
LOC_Os03g14010Os.8022.1.S1_at11/113+7578758..7582090Glycosyl hydrolase family 10 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10924.1.S1_at--1018--2691Chr03:7552896..7553003 (25 bp)
AAGCTCATACTGTTTCCTGAAGGTC
LOC_Os03g13960
Os.10924.1.S1_at--202--7811Chr03:7552875..7552899 (25 bp)
GGTCAGAAGTCGTTGTGTCCAGCCA
LOC_Os03g13960
Os.10924.1.S1_at--610--91Chr03:7552777..7552801 (25 bp)
ATTCGAGGTGCGCATGACAACTGAG
LOC_Os03g13960
Os.10924.1.S1_at--739--7671Chr03:7552743..7552767 (25 bp)
GGGTTGCAACCTAGGCAGCTGGACA
LOC_Os03g13960
Os.10924.1.S1_at--284--2211Chr03:7552721..7552745 (25 bp)
ACAAGACCACAGCTGTTGCGAGGTT
LOC_Os03g13960
Os.10924.1.S1_at--1078--391Chr03:7552630..7552654 (25 bp)
ATCAGAGCGGCACTTGCTACACTGG
LOC_Os03g13960
Os.10924.1.S1_at--9--2571Chr03:7552603..7552627 (25 bp)
AACTGTGGACGCGAGCTGTATACCG
LOC_Os03g13960
Os.10924.1.S1_at--932--611Chr03:7552552..7552576 (25 bp)
ATGCTCGTTTTCTGCAGACGCTGAT
LOC_Os03g13960
Os.10924.1.S1_at--161--8831Chr03:7552531..7552555 (25 bp)
TGATTACTCTGCACCTTCAGATCGT
LOC_Os03g13960
Os.10924.1.S1_at--302--7051Chr03:7552500..7552524 (25 bp)
GTAATTTCGATCACTAGTCCAGGAG
LOC_Os03g13960
Os.10924.1.S1_at--375--2431Chr03:7552344..7552368 (25 bp)
AAAATGACGTGCCTTCGTTTTTGCT
NONE
Target Sequence 
AAGCTCATACTGTTTCCTGAAGGTCAGAAGTCGTTGTGTCCAGCCACAGATAAGCAACCATGGTCATTCCTGTATTACTC
AAAGGGGAAAACAATCGAGGTCCCAAATATGCGGGAAGAATTCGAGGTGCGCATGACAACTGAGGTTGCCTTTGGGTTGC
AACCTAGGCAGCTGGACAAGACCACAGCTGTTGCGAGGTTGAAAGCAAAGCTCCTTCTAAGCAATGGACAATATGTGCTA
GCTGCTGCAAAGAGTGAATTAGATCGATCAGAGCGGCACTTGCTACACTGGGGAACTGTGGACGCGAGCTGTATACCGTC
AGCCTTGCAGGAAAAGGGAATTGTATGCTCGTTTTCTGCAGACGCTGATTACTCTGCACCTTCAGATCGTGAACGTGTAA
TTTCGATCACTAGTCCAGGAGAAGCCCTGGTGAAGGTGACATCTGAAAGGACTACTATTTACTGTGATGATGAAGAAACA
GCAGAGCGTGTTTATGATGCTCTTCGTAGTATTTGTAATGGGATATGATGTATATATACGATTTCACTCAAGAAAATGAC
GTGCCTTCGTTTTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis