Browse Element(s) Details


Os.10969.1.S1_at

Description gb:AK071145.1
DB_XREF= gi:32981168
TID=Os.10969.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10969 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082N05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082N05, full insert sequence.
FL= gb:AK071145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2041011/11MAR-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20370OsAffx.31821.1.S1_at11/1112+11889952..11892524Zinc knuckle family protein
LOC_Os12g20380OsAffx.31822.1.S1_at10/1112+11898125..11899921hypothetical protein
LOC_Os12g20390Os.26897.1.S1_at11/1112+11902032..11904607expressed protein
LOC_Os12g20390OsAffx.29424.1.S1_at4/1112+11902032..11904607expressed protein
LOC_Os12g20400OsAffx.26327.1.S1_s_at11/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g20400Os.15412.1.S1_x_at8/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g20400OsAffx.26327.1.S1_at7/1112+11907351..11910719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g20410Os.10969.1.S1_at11/1112+11912727..11915931MAR-binding protein, putative, expressed
LOC_Os12g20420OsAffx.11270.1.S1_x_at3/1112+11920621..11923876SWIM zinc finger family protein
LOC_Os12g20420OsAffx.11270.1.S1_at3/1112+11920621..11923876SWIM zinc finger family protein
LOC_Os12g20420OsAffx.31552.2.S1_at2/1112+11920621..11923876SWIM zinc finger family protein
LOC_Os12g20420OsAffx.31552.3.S1_x_at1/1112+11920621..11923876SWIM zinc finger family protein
LOC_Os12g20430NANA12+11926783..11928230retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20440Os.15004.1.S1_at1/1112+11931860..11933987hypothetical protein
LOC_Os12g20450NANA12+11937717..11941391retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10969.1.S1_at--282--6511Chr12:11915297..11915321 (25 bp)
GATTTGATGAAACTTGCTACGGGTA
LOC_Os12g20410
Os.10969.1.S1_at--85--2811Chr12:11915324..11915348 (25 bp)
AAGATCATATGTTACCCCACAGAAA
LOC_Os12g20410
Os.10969.1.S1_at--567--10311Chr12:11915516..11915540 (25 bp)
TTTCATGAATGCCTACAGCGAGATG
LOC_Os12g20410
Os.10969.1.S1_at--474--3391Chr12:11915531..11915555 (25 bp)
CAGCGAGATGGTTGAAGCCCGTCAA
LOC_Os12g20410
Os.10969.1.S1_at--422--5411Chr12:11915544..11915568 (25 bp)
GAAGCCCGTCAACTTATTCCTATGG
LOC_Os12g20410
Os.10969.1.S1_at--519--5371Chr12:11915686..11915710 (25 bp)
GAAGAACTCAGTCGCCAAGAATATC
LOC_Os12g20410
Os.10969.1.S1_at--75--10271Chr12:11915735..11915759 (25 bp)
TTTGAAATCCTATCCTGGACACTGG
LOC_Os12g20410
Os.10969.1.S1_at--1135--8971Chr12:11915774..11915798 (25 bp)
TGAAGCTGCCATCCTGGACCAAAGC
LOC_Os12g20410
Os.10969.1.S1_at--320--1711Chr12:11915791..11915815 (25 bp)
ACCAAAGCGTTGCATTCGTGTGTTT
LOC_Os12g20410
Os.10969.1.S1_at--299--9431Chr12:11915806..11915830 (25 bp)
TCGTGTGTTTTTCTCTGTTTAATTA
LOC_Os12g20410
Os.10969.1.S1_at--348--2531Chr12:11915842..11915866 (25 bp)
AACTCACTAGTAATTCGACCAGCGT
LOC_Os12g20410
Target Sequence 
GATTTGATGAAACTTGCTACGGGTATTAAGATCATATGTTACCCCACAGAAAGATCTACAGCTGAGGAAGCGATGTTTAC
ACAAGATGAGCTGTCGAAGTTAGTGAAGGATGCACATAAGTATGAAGGGAAGATCCGTAAGAGATCTTTCATGAATGCCT
ACAGCGAGATGGTTGAAGCCCGTCAACTTATTCCTATGGCACAAAAACAACTGGAGGACTTGGTAAAGGAGGCCAAAGAT
GCATGTGAAGCTGAACAAAGCACATGAACGCAATAAGCCAGTCAGTAGCATGAGAGAAGAACACAGTCGCATGAGAGAAG
AACTCAGTCGCCAAGAATATCACATTTCCTTAAGGGAGAACTGGTTTTGAAATCCTATCCTGGACACTGGATGGTGAGGC
TGCCTGAAGCTGCCATCCTGGACCAAAGCGTTGCATTCGTGTGTTTTTCTCTGTTTAATTATCGANCAATGGGAACTCAC
TAGTAATTCGACCAGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis