Browse Element(s) Details


Os.10985.1.S1_at

Description gb:AK068268.1
DB_XREF= gi:32978286
TID=Os.10985.1
CNT=60
FEA=FLmRNA
TIER=FL+Stack
STK=22
UG=Os.10985 (NCBI UniGene Cluster)
UG_TITLE=Pdi mRNA for protein disulfide isomerase, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147I21, full insert sequence.
FL= gb:AK059538.1 gb:AK068268.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0928011/11Protein disulfide-isomerase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09230OsAffx.30896.1.S1_at11/1111+4941971..4943680expressed protein
LOC_Os11g09230Os.51889.1.S1_x_at2/1111+4941971..4943680expressed protein
LOC_Os11g09240OsAffx.22492.1.S1_at1/1111+4945372..4951526retrotransposon protein, putative, unclassified
LOC_Os11g09240OsAffx.22492.1.S1_x_at1/1111+4945372..4951526retrotransposon protein, putative, unclassified
LOC_Os11g09250Os.31312.5.S1_x_at5/1111+4952158..4955416retrotransposon protein, putative, unclassified
LOC_Os11g09250Os.31312.2.S1_x_at4/1111+4952158..4955416retrotransposon protein, putative, unclassified
LOC_Os11g09260Os.51889.1.S1_at11/1111+4961051..4962931expressed protein
LOC_Os11g09260Os.51889.1.S1_x_at11/1111+4961051..4962931expressed protein
LOC_Os11g09270OsAffx.30898.1.S1_at10/1111+4964702..4965853hypothetical protein
LOC_Os11g09280Os.10985.1.S1_at11/1111+4967059..4970854Protein disulfide-isomerase precursor, putative, expressed
LOC_Os11g09290NANA11+4972825..4975422retrotransposon protein, putative, unclassified
LOC_Os11g09300NANA11+4978545..4984107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g09310Os.17200.1.S1_at10/1111+4986813..4988731Zinc knuckle family protein, expressed
LOC_Os11g09329Os.20320.1.S1_at11/1111+4989449..5002099VHS domain containing protein, expressed
LOC_Os11g09329Os.16476.1.A1_at11/1111+4989449..5002099VHS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003756molecular_functionprotein disulfide isomerase activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10985.1.S1_at--218--2751Chr11:4967875..4967899 (25 bp)
AAGAAGCTGGCTCCAATCTTGGATG
LOC_Os11g09280
Os.10985.1.S1_at--599--7991Chr11:4967855..4967879 (25 bp)
GGATGAGGCAGCTACGACGCTTAAA
LOC_Os11g09280
Os.10985.1.S1_at--297--6331Chr11:4967688..4967712 (25 bp)
GATGCAACTGCGAACGATGTGCCAA
LOC_Os11g09280
Os.10985.1.S1_at--968--5771Chr11:4967577..4967601 (25 bp)
GACGAGATCGTCGACTTCATTAAGA
LOC_Os11g09280
Os.10985.1.S1_at--185--5011Chr11:4967378..4967402 (25 bp)
GCATGGATGCTTGTGGCTGTAGACA
LOC_Os11g09280
Os.10985.1.S1_at--1117--9811Chr11:4967330..4967354 (25 bp)
TAACATGTTTGACAGCTCCAACGCC
LOC_Os11g09280
Os.10985.1.S1_at--555--9211Chr11:4967314..4967338 (25 bp)
TCCAACGCCAGATTTTGCCAAGGTT
LOC_Os11g09280
Os.10985.1.S1_at--1135--9431Chr11:4967237..4967261 (25 bp)
TCGGCATGTCTGTCCCATTGAGAAA
LOC_Os11g09280
Os.10985.1.S1_at--796--5571Chr11:4967216..4967240 (25 bp)
GAAATACTGTACAATCAACCCGTGG
LOC_Os11g09280
Os.10985.1.S1_at--49--6971Chr11:4967192..4967216 (25 bp)
GTACCTAGTTAATTTTACCCATGCA
LOC_Os11g09280
Os.10985.1.S1_at--378--10751Chr11:4967131..4967155 (25 bp)
TTGAATAAAGCTGCCTCGGTCGCAT
LOC_Os11g09280
Target Sequence 
AAGAAGCTGGCTCCAATCTTGGATGAGGCAGCTACGACGCTTAAAAGCGACAAGGATGTTGTCATCGCTAAGATGGATGC
AACTGCGAACGATGTGCCAAGCGAGTTNCGATGTGCAAGGTTACCCCACCCTGTACTTCGTCACCCCCAGTGGAAAGATG
GTTCCCTANGAAANGCGGCAGGACAGCCGACGAGATCGTCGACTTCATTAAGAANAACAAGGAAACCGCNGGTCAGGCGA
AGGAGAAGGCAGAGTCGGCCCCAGCNGAGCCTCTCAAGGATGAGCTCTAAACAAGTGAGTAGGAGAGGGCATGGATGCTT
GTGGCTGTAGACATGGAGGAGACGGGACCTGACGGCTAACATGTTTGACAGCTCCAACGCCAGATTTTGCCAAGGTTCTG
AAAGACGGTGAGATGGAGAGTAGTGAGAGTGGGGGAAATAGTTGATGTTTCGGCATGTCTGTCCCATTGAGAAATACTGT
ACAATCAACCCGTGGTACCTAGTTAATTTTACCCATGCAAAAGTGATAGTCGGTAGAGAAGTGGTTCTGGACAAGTTGAA
TAAAGCTGCCTCGGTCGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis