Browse Element(s) Details


Os.11022.1.S1_at

Description gb:AK063115.1
DB_XREF= gi:32973133
TID=Os.11022.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11022 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-D12, full insert sequence.
FL= gb:AK063115.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3252611/11FK506-binding protein 2-1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32480NANA9+19388981..19390264hypothetical protein
LOC_Os09g32490OsAffx.20169.1.S1_at8/119+19391557..19393658retrotransposon protein, putative, LINE subclass
LOC_Os09g32500Os.13485.1.S1_at10/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32500Os.8861.1.S1_x_at4/119+19398515..1940062460S ribosomal protein L32, putative, expressed
LOC_Os09g32510Os.20775.1.S1_at11/119+19405796..19407978Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g32520OsAffx.30120.3.S1_s_at11/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32520Os.8861.1.S1_x_at7/119+19412770..1941437260S ribosomal protein L32, putative, expressed
LOC_Os09g32526Os.11022.1.S1_at11/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526OsAffx.30120.2.S1_s_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32526Os.11022.1.S1_x_at10/119+19414995..19417619FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os09g32532Os.46760.1.S1_at10/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.8861.1.S1_x_at2/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32532Os.9721.1.S1_at1/119+19418500..1942065860S ribosomal protein L32, putative, expressed
LOC_Os09g32540OsAffx.17985.1.S1_at11/119+19424552..19430435expressed protein
LOC_Os09g32550Os.27986.1.A1_at11/119+19433295..19437299Glycosyl hydrolases family 17 protein, expressed
LOC_Os09g32560OsAffx.30121.1.S1_at11/119+19439400..19440631hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11022.1.S1_at--524--4091Chr09:19417347..19417371 (25 bp)
CGACGTGACGGAGCTCCAGATCGGC
LOC_Os09g32526
Os.11022.1.S1_at--553--1911Chr09:19417345..19417369 (25 bp)
ACGTGACGGAGCTCCAGATCGGCGT
LOC_Os09g32526
Os.11022.1.S1_at--731--8931Chr09:19417342..19417366 (25 bp)
TGACGGAGCTCCAGATCGGCGTCAA
LOC_Os09g32526
Os.11022.1.S1_at--719--1931Chr09:19417341..19417364 (24 bp)
ACGGAGCTCCAGATCGGCGTCAAGC
LOC_Os09g32526
Os.11022.1.S1_at--151--8091Chr09:19417341..19417362 (22 bp)
GGAGCTCCAGATCGGCGTCAAGCAC
LOC_Os09g32526
Os.11022.1.S1_at--821--991Chr09:19415232..19415256 (25 bp)
AGGATGGTTCACATCTTACGCGCCA
LOC_Os09g32526
Os.11022.1.S1_at--360--6251Chr09:19415230..19415254 (25 bp)
GATGGTTCACATCTTACGCGCCAAA
LOC_Os09g32526
Os.11022.1.S1_at--1098--8571Chr09:19415228..19415252 (25 bp)
TGGTTCACATCTTACGCGCCAAAAC
LOC_Os09g32526
Os.11022.1.S1_at--332--6751Chr09:19415226..19415250 (25 bp)
GTTCACATCTTACGCGCCAAAACAA
LOC_Os09g32526
Os.11022.1.S1_at--714--3471Chr09:19415221..19415245 (25 bp)
CATCTTACGCGCCAAAACAAAGTCT
LOC_Os09g32526
Os.11022.1.S1_at--397--3651Chr09:19415218..19415242 (25 bp)
CTTACGCGCCAAAACAAAGTCTAGT
LOC_Os09g32526
Target Sequence 
CGACGTGACGGAGCTCCAGATCGGCGTCAAGCACAAGCCAGAATCCTGCAGCATTCAAGCTCACAAAGGNGACAGAGTTA
AAGTTCACTACNGTGGAAAACTTACTGATGGAACAGTTTTTGATTCTAGCTATGAAAGAGGTGACCCAATCGAATTTGAG
TTGGGCACTGGCCAAGTGATCAAAGGGTGGGATCAGGGCATTCTGGGCATGTGCGTTGGCGAGAAGAGGAAGCTGAAGAT
CCCTTCAAAGCTCGGTTATGGTGCTCAAGGGTCACCGCCGACCATCCCTGGTGGAGCGACTCTCATTTTCGATACCGAGC
TTGTTGCTGTCAATGGCGAGCCAGNCAGCAAATCCGATGAGGANGATGATGACAGCGAGCTTTAGATAGNCAGGATGGTT
CACATCTTACGCGCCAAAACAAAGTCTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis