Browse Element(s) Details


Os.11067.1.S1_at

Description gb:AK109576.1
DB_XREF= gi:32994785
TID=Os.11067.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11067 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-G04, full insert sequence.
FL= gb:AK109576.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0351011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03450Os.5994.1.A1_at10/112+1402582..1404558Golgi SNARE 12 protein, putative, expressed
LOC_Os02g03460OsAffx.11877.1.S1_at11/112+1406098..1409346phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g03470Os.54187.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.27739.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.54187.1.A1_x_at11/112+1412107..1416005expressed protein
LOC_Os02g03480OsAffx.24082.1.S1_s_at11/112+1416610..1417705expressed protein
LOC_Os02g03490OsAffx.24083.1.S1_x_at11/112+1420014..1420997expressed protein
LOC_Os02g03490Os.10395.1.S1_s_at9/112+1420014..1420997expressed protein
LOC_Os02g03500Os.10395.1.S1_s_at9/112+1423747..1424390expressed protein
LOC_Os02g03510Os.11067.1.S1_at11/112+1427398..1428118expressed protein
LOC_Os02g03510Os.10395.1.S1_s_at9/112+1427398..1428118expressed protein
LOC_Os02g03520Os.12307.1.S1_at10/112+1430330..1430872expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_at11/112+1433310..1436848expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_s_at11/112+1433310..1436848expressed protein
LOC_Os02g03540Os.27658.1.S1_a_at11/112+1437433..1441125Ribose-phosphate pyrophosphokinase 1, putative, expressed
LOC_Os02g03550Os.53507.1.S1_at10/112+1443911..1446402xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g03560Os.13649.1.S1_at11/112+1447139..1449635expressed protein
LOC_Os02g03570OsAffx.11879.1.S1_at11/112+1450176..1450766Hsp20/alpha crystallin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11067.1.S1_at--849--1611Chr02:1427848..1427872 (25 bp)
AGCGGCTCCGGCGATCCATATTTTT
LOC_Os02g03510
Os.11067.1.S1_at--289--8331Chr02:1427851..1427875 (25 bp)
GGCTCCGGCGATCCATATTTTTATA
LOC_Os02g03510
Os.11067.1.S1_at--1089--9211Chr02:1427854..1427878 (25 bp)
TCCGGCGATCCATATTTTTATAAAT
LOC_Os02g03510
Os.11067.1.S1_at--454--10331Chr02:1427871..1427895 (25 bp)
TTATAAATTCGCAGTCGATTGTTTG
LOC_Os02g03510
Os.11067.1.S1_at--35--8771Chr02:1427939..1427963 (25 bp)
TGTTTATTTCATATGCAAACCTCGC
LOC_Os02g03510
Os.11067.1.S1_at--399--4831Chr02:1428007..1428031 (25 bp)
GCTAATTCATCCTTCACTCCATTAA
LOC_Os02g03510
Os.11067.1.S1_at--769--111Chr02:1428011..1428035 (25 bp)
ATTCATCCTTCACTCCATTAATTTG
LOC_Os02g03510
Os.11067.1.S1_at--27--9251Chr02:1428016..1428040 (25 bp)
TCCTTCACTCCATTAATTTGTTATA
LOC_Os02g03510
Os.11067.1.S1_at--584--2251Chr02:1428040..1428064 (25 bp)
AAATATATATCCTTGTACTAGTGTA
LOC_Os02g03510
Os.11067.1.S1_at--492--211Chr02:1428046..1428070 (25 bp)
ATATCCTTGTACTAGTGTAAATGTA
LOC_Os02g03510
Os.11067.1.S1_at--932--2791Chr02:1428074..1428098 (25 bp)
AAGATCTTAAGTTATGGGTGGATCA
LOC_Os02g03510
Target Sequence 
AGCGGCTCCGGCGATCCATATTTTTATAAATTCGCAGTCGATTGTTTGTTGTTAATCAAAGTTTGGTTAATTTATCCGTC
GAGTGTTTGGTTGTTTATTTCATATGCAAACCTCGCGATTTGTGATAAATAATTACCGAAATGTATGTGTGTGTGGGGTG
CTAATTCATCCTTCACTCCATTAATTTGTTATAAATATATATCCTTGTACTAGTGTAAATGTAATAAAGATCTTAAGTTA
TGGGTGGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis