Browse Element(s) Details


Os.11069.1.S1_at

Description gb:AK061566.1
DB_XREF= gi:32971584
TID=Os.11069.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11069 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-311-E10, full insert sequence.
FL= gb:AK099007.1 gb:AK100226.1 gb:AK061566.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4336011/11NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43300Os.15545.1.S1_at11/115+25105050..25109889H1flk, putative, expressed
LOC_Os05g43310Os.5215.1.S1_at11/115+25110262..25111505Photosystem II reaction centre W protein containing protein, expressed
LOC_Os05g43320OsAffx.27290.1.S1_at11/115+25111479..25113208hypothetical protein
LOC_Os05g43330Os.29067.2.S1_at3/115+25117442..25117980hypothetical protein
LOC_Os05g43340OsAffx.22171.1.S1_at1/115+25121226..25124129retrotransposon protein, putative, unclassified
LOC_Os05g43350NANA5+25125622..25130445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43360Os.11069.1.S1_at11/115+25131326..25134653NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os05g43370Os.49125.1.S1_s_at6/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43370Os.6027.1.A1_at1/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43370OsAffx.15220.3.S1_at1/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43380Os.23126.1.S1_at11/115+25141682..25144197Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os05g43390Os.7516.1.S1_at11/115+25146490..25149994Signal recognition particle 54 kDa protein 2, putative, expressed
LOC_Os05g43400OsAffx.15084.1.S1_at11/115+25152634..25154489hypothetical protein
LOC_Os05g43410NANA5+25156077..25162231retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0005739cellular_componentmitochondrion
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11069.1.S1_at--688--8331Chr05:25133492..25133516 (25 bp)
GGCTGCTGTGTGAATGCTCCCATGA
LOC_Os05g43360
Os.11069.1.S1_at--297--71Chr05:25133516..25133540 (25 bp)
ATTGCTGTGGCCGATTATTCTAAAG
LOC_Os05g43360
Os.11069.1.S1_at--339--6171Chr05:25134004..25134028 (25 bp)
GAGGACCTCACTCCTAAACGAGTTG
LOC_Os05g43360
Os.11069.1.S1_at--315--5811Chr05:25134226..25134250 (25 bp)
GAGCGGAAAAACTGTGGCCCTGCTG
LOC_Os05g43360
Os.11069.1.S1_at--52--8551Chr05:25134249..25134273 (25 bp)
TGGAGGGAATACCACCTTGCACGGT
LOC_Os05g43360
Os.11069.1.S1_at--476--4291Chr05:25134286..25134310 (25 bp)
CCTCCGTGCAGGGATCTAGATGCTT
LOC_Os05g43360
Os.11069.1.S1_at--743--1291Chr05:25134303..25134327 (25 bp)
AGATGCTTGCTAGGTTTGCTTTGAA
LOC_Os05g43360
Os.11069.1.S1_at--564--10811Chr05:25134505..25134529 (25 bp)
TTGTCAGCTGACATGAGGCGGCAGT
LOC_Os05g43360
Os.11069.1.S1_at--111--1271Chr05:25134537..25134561 (25 bp)
AGATTTGTATTCGTCTTTCGGCAAA
LOC_Os05g43360
Os.11069.1.S1_at--468--8651Chr05:25134588..25134612 (25 bp)
TGGGCATTCCTTTTCAGCTTCTGAT
LOC_Os05g43360
Os.11069.1.S1_at--499--4912Chr05:25134604..25134628 (25 bp)
GCTTCTGATTAGTGATGAGTGCCCA
LOC_Os05g43360
Target Sequence 
GGCTGCTGTGTGAATGCTCCCATGATTGCTGTGGCCGATTATTCTAAAGGTTCAGAGGGTTACACATACAACTATTATGA
GGACCTCACTCCTAAACGAGTTGTTGAGATCGTCGAGATGCTGAAAAGAGGAGAAACCCCTCCTCGCGGCACACAACACC
CAGAGCGGAAAAACTGTGGCCCTGCTGGAGGGAATACCACCTTGCACGGTGAGCCGAAACCTCCTCCGTGCAGGGATCTA
GATGCTTGCTAGGTTTGCTTTGAATTACAGGCACACAAATAAGTTGGGCCACACNNTATGATTNTATGGTGTGGAAACTG
GAACAAAGCAAGGCGATGTGTTGTTTGTATTTTGATCTTGTTTTGTTTACCTCTGCCCGCATCNTTTTTTCTCTCCTTTT
GCACCATCAGAGAAATGNTACATTGATAATGACGATATGTTATTTTGTCAGCTGACATGAGGCGGCAGTGGTAAAAAGAT
TTGTATTCGTCTTTCGGCAAAGATAAAACTCTTGGACATTCTCNTTTTTGGGCATTCCTTTTCAGCTTCTGATTAGTGAT
GAGTGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis