Browse Element(s) Details


Os.11144.1.S1_at

Description gb:AK059870.1
DB_XREF= gi:32969888
TID=Os.11144.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11144 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative vacuolar protein sorting-associated protein (B1100D10.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-E10, full insert sequence.
FL= gb:AK059870.1 gb:AK104274.1 gb:AK099116.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5726011/11VPS28 protein homolog 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57220Os.2359.1.S1_s_at11/111+33386035..33391559SCAMP family protein, expressed
LOC_Os01g57220Os.9727.1.S1_at1/111+33386035..33391559SCAMP family protein, expressed
LOC_Os01g57230Os.50348.1.S1_at11/111+33391574..33394682transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g57240Os.30597.1.S1_at11/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.2.S1_at11/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.3.S1_x_at9/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57240Os.30597.3.S1_at3/111+33400431..33405799Protein ULTRAPETALA2, putative, expressed
LOC_Os01g57250Os.38457.1.S1_s_at11/111+33408969..33410242expressed protein
LOC_Os01g57250Os.48500.1.A1_s_at11/111+33408969..33410242expressed protein
LOC_Os01g57250OsAffx.3864.1.S1_x_at1/111+33408969..33410242expressed protein
LOC_Os01g57260Os.11144.1.S1_at11/111+33416058..33417156VPS28 protein homolog 2, putative, expressed
LOC_Os01g57270Os.15222.1.S1_at10/111+33418551..33423079rust resistance protein, putative, expressed
LOC_Os01g57280Os.35231.1.S1_at11/111+33424930..33430752Rp1, putative, expressed
LOC_Os01g57294OsAffx.11634.2.S1_x_at11/111+33442053..33442835hypothetical protein
LOC_Os01g57294OsAffx.11634.1.S1_x_at8/111+33442053..33442835hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11144.1.S1_at--182--3451Chr01:33416589..33416613 (25 bp)
CAGTGCGTCCAGAGCTTTATTACCG
LOC_Os01g57260
Os.11144.1.S1_at--763--831Chr01:33416616..33416640 (25 bp)
ATGGATGCCGTCAAGCTCAACATGC
LOC_Os01g57260
Os.11144.1.S1_at--879--2511Chr01:33416814..33416838 (25 bp)
AACTTCGATCTGGATTCGGCGTACA
LOC_Os01g57260
Os.11144.1.S1_at--784--8371Chr01:33416831..33416855 (25 bp)
GGCGTACAGTGCGTTCATGGCATCA
LOC_Os01g57260
Os.11144.1.S1_at--146--8911Chr01:33416874..33416898 (25 bp)
TGAGCAAGCCTCATCCTGGTTCTGA
LOC_Os01g57260
Os.11144.1.S1_at--475--4271Chr01:33416888..33416912 (25 bp)
CCTGGTTCTGAGTTGGTTTCTTCTT
LOC_Os01g57260
Os.11144.1.S1_at--1071--8771Chr01:33416928..33416952 (25 bp)
TGTTTTTCTATGGATCACCGCTGCA
LOC_Os01g57260
Os.11144.1.S1_at--143--3371Chr01:33416943..33416967 (25 bp)
CACCGCTGCAGTGTTATAGCCTTAT
LOC_Os01g57260
Os.11144.1.S1_at--1137--2991Chr01:33417043..33417067 (25 bp)
AATGAGTTCTGTGGCCTATTGGTTA
LOC_Os01g57260
Os.11144.1.S1_at--598--6051Chr01:33417101..33417125 (25 bp)
GAGATTACCTGATCCTTATACGAAT
LOC_Os01g57260
Os.11144.1.S1_at--906--5271Chr01:33417131..33417155 (25 bp)
GAATGATTGCGCTCATGCTTACGTT
LOC_Os01g57260
Target Sequence 
CAGTGCGTCCAGAGCTTTATTACCGCCATGGATGCCGTCAAGCTCAACATGCTCGCCAACGACCAGGTCCGCCCCTTGCT
CCACGACCTCTCGACCTCCATGGGGAAGCTGGGCCCCGTCCTGCCGCCGGACTTCGAAGGGAAGGTCAAGGTGAGCGAGT
GGCTCGCCAAGCTAAATAAGATGGGGGCCGGGGATGAGCTCACCGAGCAACAGGCAAGGCAGCTCAACTTCGATCTGGAT
TCGGCGTACAGTGCGTTCATGGCATCACTGCCCAGCACCGGCCTATGAGCAAGCCTCATCCTGGTTCTGAGTTGGTTTCT
TCTTTTTATTTTTCTCATGTGTTTTTCTATGGATCACCGCTGCAGTGTTATAGCCTTATAGGTATGTGTAACTTGAATTG
TGCTATATTATTTGTCAATAATAGTGCCAATTTTGTGGTAACACATGCTGTTATAATGAGTTCTGTGGCCTATTGGTTAT
ATATATTGTACCGTNCCGGATTCTCACTTCGTGAGATTACCTGATCCTTATACGAATTATCTGAATGATTGCGCTCATGC
TTACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11144.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis