Browse Element(s) Details


Os.11153.1.S1_s_at

Description gb:BI799758
DB_XREF= gi:15851482
DB_XREF=H140A03
CLONE=H140A03
TID=Os.11153.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.11153 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5804011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58000Os.53477.1.S1_at2/114+34322396..34326468B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.4204.1.A1_at11/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58010OsAffx.14462.1.S1_at10/114+34327256..34333966B3 DNA binding domain containing protein
LOC_Os04g58020Os.15556.1.S1_at11/114+34336077..34340491myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os04g58030OsAffx.14463.1.S1_at11/114+34345439..34346613expressed protein
LOC_Os04g58040Os.11153.1.S1_s_at11/114+34347728..34350939hypothetical protein
LOC_Os04g58040OsAffx.7779.1.S1_at1/114+34347728..34350939hypothetical protein
LOC_Os04g58040Os.52448.1.S1_x_at1/114+34347728..34350939hypothetical protein
LOC_Os04g58050Os.50627.1.S1_at11/114+34354424..34355978expressed protein
LOC_Os04g58050OsAffx.4205.1.S1_x_at11/114+34354424..34355978expressed protein
LOC_Os04g58060Os.9005.1.S1_s_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58060OsAffx.26652.1.S1_at11/114+34362040..34366473Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os04g58070OsAffx.14464.1.S1_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g58070OsAffx.14464.1.S1_x_at11/114+34367746..34369168Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11153.1.S1_s_at--587--1911Chr04:34350203..34350227 (25 bp)
ACGTGTGTTCGGTGCGAGCCTGCTA
LOC_Os04g58040
Os.11153.1.S1_s_at--918--8791Chr04:34350208..34350232 (25 bp)
TGTTCGGTGCGAGCCTGCTACGCTA
LOC_Os04g58040
Os.11153.1.S1_s_at--939--7271Chr04:34350214..34350238 (25 bp)
GTGCGAGCCTGCTACGCTACCCGTG
LOC_Os04g58040
Os.11153.1.S1_s_at--399--392Chr04:34350262..34350286 (25 bp)
ATCACTGGCTCCATCGGCCTGGGAG
LOC_Os04g58040
Os.11153.1.S1_s_at--501--4332Chr04:34350272..34350296 (25 bp)
CCATCGGCCTGGGAGACTGGGAGCA
LOC_Os04g58040
Os.11153.1.S1_s_at--715--5732Chr04:34350286..34350310 (25 bp)
GACTGGGAGCAGGTAACTTCGAGCT
LOC_Os04g58040
Os.11153.1.S1_s_at--99--3452Chr04:34350295..34350319 (25 bp)
CAGGTAACTTCGAGCTGCCATGGAA
LOC_Os04g58040
Os.11153.1.S1_s_at--1159--4772Chr04:34350308..34350332 (25 bp)
GCTGCCATGGAAGAGGGCTGCAGTT
LOC_Os04g58040
Os.11153.1.S1_s_at--595--7832Chr04:34350374..34350398 (25 bp)
GGTCAATTGTTTTTCCTCCTTCAAG
LOC_Os04g58040
Os.11153.1.S1_s_at--306--10732Chr04:34350380..34350404 (25 bp)
TTGTTTTTCCTCCTTCAAGATTTGT
LOC_Os04g58040
Os.11153.1.S1_s_at--9--5071Chr04:34350416..34350440 (25 bp)
GCAGCAGGGGATTTGTTTCTTCAAG
LOC_Os04g58040
Target Sequence 
ACGTGTGTTCGGTGCGAGCCTGCTACGCTACCCGTGCTGCTGCCTCCAACTCTCTACCCATCACTGGCTCCATCGGCCTG
GGAGACTGGGAGCAGGTAACTTCGAGCTGCCATGGAAGAGGGCTGCAGTTCCAATTGGCCGGCCACACCTTGTGCCGCAG
CGACGACGGCCGGTCAATTGTTTTTCCTCCTTCAAGATTTGTTTGTTCTTCNAGCAGCAGGGGATTTGTTTCTTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11153.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis