Browse Element(s) Details


Os.11184.1.S1_at

Description gb:AK070265.1
DB_XREF= gi:32980289
TID=Os.11184.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11184 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023045N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045N19, full insert sequence.
FL= gb:AK070265.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3169011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31650Os.35344.3.S1_x_at9/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650Os.35344.18.S1_x_at6/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650OsAffx.22940.5.S1_x_at3/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31660OsAffx.14073.1.S1_at11/114+18779551..18779973hypothetical protein
LOC_Os04g31670OsAffx.14074.1.S1_at11/114+18788451..18789343hypothetical protein
LOC_Os04g31670Os.52101.1.S1_at10/114+18788451..18789343hypothetical protein
LOC_Os04g31680OsAffx.14075.1.S1_at11/114+18790715..18792054hypothetical protein
LOC_Os04g31690Os.11184.1.S1_at11/114+18797458..18800398expressed protein
LOC_Os04g31700Os.8672.1.S1_at11/114+18800365..18805535methylisocitrate lyase 2, putative, expressed
LOC_Os04g31710OsAffx.3968.1.S1_at11/114+18807125..18808116expressed protein
LOC_Os04g31720OsAffx.26275.1.S1_at11/114+18808476..18809186hypothetical protein
LOC_Os04g31730Os.50181.1.S1_at10/114+18810476..18811405expressed protein
LOC_Os04g31740OsAffx.3969.1.S1_at10/114+18813961..18814651hypothetical protein
LOC_Os04g31750OsAffx.14076.1.S1_at11/114+18816251..18817073hypothetical protein
LOC_Os04g31760OsAffx.3970.1.S1_at11/114+18817513..18818170expressed protein
LOC_Os04g31769NANA4+18820811..18820981NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11184.1.S1_at--943--5831Chr04:18799619..18799643 (25 bp)
GACCAATTCGTGTAGTTTCCAGCGA
LOC_Os04g31690
Os.11184.1.S1_at--1038--6871Chr04:18799862..18799886 (25 bp)
GTATATTCCATATTTCCGTCCATGT
LOC_Os04g31690
Os.11184.1.S1_at--1--10671Chr04:18799875..18799899 (25 bp)
TTCCGTCCATGTTGTTTCATCATCA
LOC_Os04g31690
Os.11184.1.S1_at--257--3531Chr04:18799916..18800020 (25 bp)
CATGCTTGCTGGGAGCCTTTGTAAA
LOC_Os04g31690
Os.11184.1.S1_at--1151--1051Chr04:18800033..18800057 (25 bp)
AGGGAGGACCCTTTTTGTGACATCA
LOC_Os04g31690
Os.11184.1.S1_at--280--8691Chr04:18800048..18800072 (25 bp)
TGTGACATCAGAGCCCAACCAGAAA
LOC_Os04g31690
Os.11184.1.S1_at--84--651Chr04:18800192..18800216 (25 bp)
ATGCATGTTACCACTTCATAGCTTT
LOC_Os04g31690
Os.11184.1.S1_at--607--8371Chr04:18800257..18800281 (25 bp)
GGCGAGATGCTCCTAAACTTTTTTA
LOC_Os04g31690
Os.11184.1.S1_at--227--2151Chr04:18800282..18800306 (25 bp)
ACAGACGTTTTGAAGCTTGCTGCTA
LOC_Os04g31690
Os.11184.1.S1_at--778--5391Chr04:18800293..18800317 (25 bp)
GAAGCTTGCTGCTAGACAACTTGGC
LOC_Os04g31690
Os.11184.1.S1_at--147--8511Chr04:18800314..18800338 (25 bp)
TGGCAGAGCGTCATACTGGTATTCT
LOC_Os04g31690
Target Sequence 
GACCAATTCGTGTAGTTTCCAGCGAGCAGGTCCANAGCCNGNTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTAT
TTCTTATGAACTGAAATAATACGCCATGTATATTCCATATTTCCGTCCATGTTGTTTCATCATCATCCTNACTGCATTCT
GGCATGCTTGCTGGGAGCCTTTGTAAATCGAAGAGGAATAGGGAGGACCCTTTTTGTGACATCAGAGCCCAACCAGAAAC
GGCTCCAANCGCATGCGCTACAATGTAACAAGTTATTAGTCTGTAGCATAGAGATCNCGATTAGCTAATGTGTATTGTTT
TATGTTGCATGTTTATCGATTTAATAAAAGGAAATAAATATGCATGTTACCACTTCATAGCTTTTTTATGGAAGCATGTG
TGAGAAATCTCTGTATGTTTAGCNANGGCGAGATGCTCCTAAACTTTTTTAACAGACGTTTTGAAGCTTGCTGCTAGACA
ACTTGGCAGAGCGTCATACTGGTATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis