Browse Element(s) Details


Os.11245.1.S2_at

Description gb:AK070329.1
DB_XREF= gi:32980353
TID=Os.11245.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.11245 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048G03, full insert sequence.
FL= gb:AK067027.1 gb:AK104884.1 gb:AK070329.1 gb:AK059501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2360011/11Ribophorin I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23560OsAffx.14789.1.S1_at10/115+13433843..13434206hypothetical protein
LOC_Os05g23570OsAffx.12420.1.S1_at1/115+13439065..13439730hypothetical protein
LOC_Os05g23580OsAffx.26984.1.S1_at11/115+13441429..13443084hypothetical protein
LOC_Os05g23590OsAffx.14790.1.S1_at11/115+13445697..13450277retrotransposon, putative, centromere-specific
LOC_Os05g23590OsAffx.25367.1.S1_at1/115+13445697..13450277retrotransposon, putative, centromere-specific
LOC_Os05g23600Os.11245.1.S2_at11/115+13451471..13456212Ribophorin I family protein, expressed
LOC_Os05g23600Os.11245.1.S1_at11/115+13451471..13456212Ribophorin I family protein, expressed
LOC_Os05g23610Os.17851.1.S1_at11/115+13458257..13462992Protein phosphatase inhibitor 2 containing protein, expressed
LOC_Os05g23620OsAffx.26985.1.S1_x_at11/115+13464902..13469420Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os05g23620Os.10952.1.S1_at11/115+13464902..13469420Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os05g23630OsAffx.26986.1.S1_at6/115+13476234..13477166hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004576molecular_functionoligosaccharyl transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11245.1.S2_at--62--3071Chr05:13455490..13455514 (25 bp)
AATCATGCAAAGTGGCTCGTAAGAC
LOC_Os05g23600
Os.11245.1.S2_at--294--10751Chr05:13455549..13455573 (25 bp)
TTGAAGCCATTGTTGACATCCCTGC
LOC_Os05g23600
Os.11245.1.S2_at--343--571Chr05:13455578..13455602 (25 bp)
ATCCTCTCAGTCTTACCAGATATGG
LOC_Os05g23600
Os.11245.1.S2_at--826--671Chr05:13455814..13455838 (25 bp)
ATGACAAGGCATTCCACTGTGGTTG
LOC_Os05g23600
Os.11245.1.S2_at--1096--8051Chr05:13455873..13455897 (25 bp)
GGAGAACAGGATTGCTGCCCAGCAG
LOC_Os05g23600
Os.11245.1.S2_at--1101--3031Chr05:13455964..13455988 (25 bp)
AATCCGGCGCTGCATGGTATGTCAA
LOC_Os05g23600
Os.11245.1.S2_at--532--391Chr05:13456013..13456037 (25 bp)
ATCACCTGGTTTCTCATTGTGCGAA
LOC_Os05g23600
Os.11245.1.S2_at--931--7151Chr05:13456091..13456115 (25 bp)
GTCTCAGTCATTCAGGCTGGGAGTT
LOC_Os05g23600
Os.11245.1.S2_at--703--711Chr05:13456133..13456157 (25 bp)
ATGATAAGCACTTGTGACCGCCTGA
LOC_Os05g23600
Os.11245.1.S2_at--195--8931Chr05:13456147..13456171 (25 bp)
TGACCGCCTGAAACTGATTGAAATT
LOC_Os05g23600
Os.11245.1.S2_at--283--3091Chr05:13456180..13456204 (25 bp)
AATAGCAAATCACGCGACCTTTCAC
LOC_Os05g23600
Target Sequence 
AATCATGCAAAGTGGCTCGTAAGACAGCTGATGCACAGTTTAAGGAATTAGCAAAAGAGTTGAAGCCATTGTTGACATCC
CTGCAGTCATCCTCTCAGTCTTACCAGATATGGCCAAAGGTAGAGGAATTGGTTGCCAAGGAGAGAGAGTTGCAGGATAA
GCTCATGACAAGGCATTCCACTGTGGTTGACAGCTTTGAAAAGAAGTTGCGAGGGCAAGATGTGGAGAACAGGATTGCTG
CCCAGCAGCAGAAAGTTGCTGCCCTGAGGCAAGAGGTCGAATCTCTTTTAGAGTACATCAGTGAGATCTGAGCGAATCCG
GCGCTGCATGGTATGTCAATTTAGCAATTAGACTGGAGAATGGATCACCTGGTTTCTCATTGTGCGAATTTGATATGCTC
GAATTCGAATCAAATACTCGTAGATTTCCTGTTGATAACCTGTCTCAGTCATTCAGGCTGGGAGTTTCAAAGGACCTTGT
AACATGATAAGCACTTGTGACCGCCTGAAACTGATTGAAATTTTGCACTTAATAGCAAATCACGCGACCTTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11245.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis