Browse Element(s) Details


Os.11336.1.S1_at

Description gb:AK071542.1
DB_XREF= gi:32981565
TID=Os.11336.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.11336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023100A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100A19, full insert sequence.
FL= gb:AK121836.1 gb:AK071542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3869011/11major facilitator superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38620Os.54125.1.S1_at11/119+22212010..22217764NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os09g38630OsAffx.30191.1.S1_at11/119+22219929..22221506IBR domain containing protein
LOC_Os09g38640OsAffx.6519.1.S1_at11/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38640OsAffx.2477.1.S1_x_at1/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38650Os.56200.1.S1_at11/119+22224746..22226350expressed protein
LOC_Os09g38660Os.51230.1.S1_at11/119+22229812..22232304expressed protein
LOC_Os09g38670OsAffx.30192.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670OsAffx.30192.1.S1_s_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670Os.47888.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38680OsAffx.18048.1.S1_at11/119+22237146..22237945hypothetical protein
LOC_Os09g38690Os.11336.1.S1_at11/119+22238962..22243005major facilitator superfamily protein, expressed
LOC_Os09g38700Os.23291.1.A1_at4/119+22243503..22248101strubbelig receptor family 5, putative, expressed
LOC_Os09g38710Os.53664.1.S1_s_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38710Os.53664.1.S1_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38720OsAffx.30193.1.S1_at11/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38720Os.46646.1.S1_x_at4/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38730Os.54799.1.A1_at5/119+22260127..2226147326S proteasome subunit P45 family protein
LOC_Os09g38740Os.7778.1.S1_at1/119+22263409..22263832hypothetical protein
LOC_Os09g38750OsAffx.18049.1.S1_at11/119+22265170..22268354expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11336.1.S1_at--634--5611Chr09:22242327..22242351 (25 bp)
GACAACTATCTTCCTGTTCGGTGCA
LOC_Os09g38690
Os.11336.1.S1_at--956--1551Chr09:22242370..22242394 (25 bp)
AGCTTCATTGTCTTGCACATCTATG
LOC_Os09g38690
Os.11336.1.S1_at--1024--10131Chr09:22242391..22242527 (25 bp)
TATGCTCCTGAGATATACCCAACCG
LOC_Os09g38690
Os.11336.1.S1_at--681--1771Chr09:22242539..22242563 (25 bp)
ACCGGAGTCGGGTTTGCGAGCTCAA
LOC_Os09g38690
Os.11336.1.S1_at--759--1571Chr09:22242557..22242581 (25 bp)
AGCTCAATCGCTCGTTTCGGTGGGA
LOC_Os09g38690
Os.11336.1.S1_at--189--391Chr09:22242650..22242674 (25 bp)
ATCACGGTGATGCTCGTCTCAGGTG
LOC_Os09g38690
Os.11336.1.S1_at--1109--7151Chr09:22242665..22242689 (25 bp)
GTCTCAGGTGTTGCAGTCTCATACT
LOC_Os09g38690
Os.11336.1.S1_at--1088--7131Chr09:22242680..22242704 (25 bp)
GTCTCATACTTTCCCCTGGAAACAA
LOC_Os09g38690
Os.11336.1.S1_at--197--8891Chr09:22242717..22242741 (25 bp)
TGAGTGACCACATCGCGGCGTAAGA
LOC_Os09g38690
Os.11336.1.S1_at--955--4771Chr09:22242814..22242838 (25 bp)
GCTCCTAGAGGCCATTCAGATTTTT
LOC_Os09g38690
Os.11336.1.S1_at--911--3291Chr09:22242949..22242973 (25 bp)
CAAATCGAGATGCTTGCTTTGCTCT
LOC_Os09g38690
Target Sequence 
GACAACTATCTTCCTGTTCGGTGCACGCATTTGCATCTCCGCAAGCTTCATTGTCTTGCACATCTATGCTCCTGAGATAT
ACCCAACCGCAGTCAGGGCTACCGGAGTCGGGTTTGCGAGCTCAATCGCTCGTTTCGGTGGGATCTTGTGCCCTCTTGTG
GCCGTTGGTTTGGTGCACGCGTGCCATCAGACTGCAGCCNATCCTGATATTCATCACGGTGATGCTCGTCTCAGGTGTTG
CAGTCTCATACTTTCCCCTGGAAACAAGCGGCCGGAAATTGAGTGACCACATCGCGGCGTAAGAGCTAAGTTGCGAGCAG
AATCTGACAGTGTTGCAAGTGCTAGTTTCTTTAGCTATACAAAATTACAGGATTGAGCTCCTAGAGGCCATTCAGATTTT
TTTTTTCTTTCAGTNCGTTTAAAGATCATATATATAGAATAGAAATGAAAGATGGTGGATTTCAGATTTTAAATGTCATT
ACATTGTTTTAACCAGACATATGTAAACTGCCAAATCGAGATGCTTGCTTTGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis