Browse Element(s) Details


Os.11396.1.S1_at

Description gb:AK120427.1
DB_XREF= gi:37990050
TID=Os.11396.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095H17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095H17, full insert sequence.
FL= gb:AK120427.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6806011/11Copine family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68010Os.7724.1.S1_at11/111+39865000..39867945TBC domain containing protein, expressed
LOC_Os01g68020Os.24338.1.A1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68020Os.11316.1.S1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68030Os.4675.1.S1_at5/111+39876192..39877575expressed protein
LOC_Os01g68040Os.26355.1.S1_at11/111+39878283..39882103CorA-like Mg2+ transporter protein, expressed
LOC_Os01g68050Os.8422.1.S1_at11/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68050Os.47836.1.A1_at4/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68060Os.11396.1.S1_at11/111+39892600..39896895Copine family protein, expressed
LOC_Os01g68070Os.52250.1.A1_at11/111+39903897..39907035salt-inducible protein, putative, expressed
LOC_Os01g68080OsAffx.23965.1.S1_at11/111+39907344..39908254Harpin-induced protein 1 containing protein
LOC_Os01g68090OsAffx.11785.1.S1_at11/111+39909204..39910571Harpin-induced protein 1 containing protein
LOC_Os01g68104OsAffx.2432.1.S1_at11/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104Os.19434.1.S1_at9/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.3.S1_at7/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.2.S1_x_at2/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.1.S1_at1/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68120Os.49417.1.S1_at11/111+39919469..39932566RNase3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11396.1.S1_at--495--5251Chr01:39893171..39893195 (25 bp)
GAATCGTGCCCAATATGTCGCAGTC
LOC_Os01g68060
Os.11396.1.S1_at--590--7231Chr01:39893155..39893179 (25 bp)
GTCGCAGTCCAATCTCCACAAGAAT
LOC_Os01g68060
Os.11396.1.S1_at--1073--8491Chr01:39893087..39893111 (25 bp)
TGGCATACTGGAGACCACCTTGTGT
LOC_Os01g68060
Os.11396.1.S1_at--943--1731Chr01:39893071..39893095 (25 bp)
ACCTTGTGTCACATTGGGCGATGGA
LOC_Os01g68060
Os.11396.1.S1_at--536--10491Chr01:39892984..39893008 (25 bp)
TTAAGTACTGGGTTTGCATCGACAA
LOC_Os01g68060
Os.11396.1.S1_at--743--5271Chr01:39892886..39892910 (25 bp)
GAATGATCCGAACTCCAGTGCAAGA
LOC_Os01g68060
Os.11396.1.S1_at--328--991Chr01:39892792..39892816 (25 bp)
AGGAGTCTGTCTGATTAGTCGAACA
LOC_Os01g68060
Os.11396.1.S1_at--913--251Chr01:39892760..39892784 (25 bp)
ATATCGCGATGTTGGTTTCGTCACC
LOC_Os01g68060
Os.11396.1.S1_at--1140--3331Chr01:39892739..39892763 (25 bp)
CACCGTGGCCGACATAAGTTTTAGA
LOC_Os01g68060
Os.11396.1.S1_at--83--10031Chr01:39892718..39892742 (25 bp)
TAGAGGATTCGTTTTCCAGTGCCGT
LOC_Os01g68060
Os.11396.1.S1_at--1132--10231Chr01:39892614..39892638 (25 bp)
TTTGGTGCCATTTTTTCTAGTGAAT
LOC_Os01g68060
Target Sequence 
GAATCGTGCCCAATATGTCGCAGTCCAATCTCCACAAGAATAAAGCTATACTAGCAATGGCAGTTTGGATCATTTGCGAA
TGGGTGGCATACTGGAGACCACCTTGTGTCACATTGGGCGATGGATTGTATTGGATGCTTCAAGTGCAATCCATGCAAAG
CCTTTGAACGGCTTGCAGACAAGCCCGTTAAGTACTGGGTTTGCATCGACAAGGATCGCAAGGCCAGCAATCCACTGCTC
CAAGATTGTGGAGCAGGGGATGTCTCAAGTATTGAAACCCACTAGGAATGATCCGAACTCCAGTGCAAGAAGTGGGTTGA
TAAAATATTCTAACGAATTGAAGAAAAGAAAGAAAAGGAGAAATCCTGATGGATCGAACAGGAGTCTGTCTGATTAGTCG
AACATTTGTACATATCGCGATGTTGGTTTCGTCACCGTGGCCGACATAAGTTTTAGAGGATTCGTTTTCCAGTGCCGTCT
TCATGCAAGATTTGTTTGTTTATTCATGCGTTTTTGTAAAGATTTGCAGTTTTNGTATATGATTGAAAGTGACTTTTTTT
GGTGCCATTTTTTCTAGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis