Browse Element(s) Details


Os.11459.1.S1_at

Description gb:CR279600
DB_XREF= gi:44666166
DB_XREF=CR279600
CLONE=y809f12p3
TID=Os.11459.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.11459 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_192425.1 (A.thaliana) 4-coumarate--CoA ligase - like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0578011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05740Os.4190.1.S1_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05740Os.48663.1.A1_s_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05750Os.49591.1.S1_at9/113+2845490..2847256heavy metal-associated domain containing protein, expressed
LOC_Os03g05760Os.26417.1.S1_at11/113+2849474..2854541Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os03g05770Os.11550.1.S1_at11/113+2857942..2859941Peroxidase family protein, expressed
LOC_Os03g05780Os.11459.1.S1_at11/113+2862160..2867033AMP-binding enzyme family protein, expressed
LOC_Os03g05790Os.38395.3.S1_x_at11/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.2.S1_x_at9/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.4.S1_x_at7/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.1.S1_at1/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05800Os.56167.1.S1_at11/113+2876588..2879385expressed protein
LOC_Os03g05806Os.48438.1.S1_at11/113+2880707..2885725RNA pseudouridylate synthase family protein, expressed
LOC_Os03g05812Os.51215.2.S1_x_at11/113+2886226..2891769expressed protein
LOC_Os03g05812Os.51215.2.S1_at11/113+2886226..2891769expressed protein
LOC_Os03g05812Os.51215.1.S1_at11/113+2886226..2891769expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009611biological_processresponse to wounding
GO:0009621biological_processresponse to pathogenic fungi
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009698biological_processphenylpropanoid metabolism
GO:0005777cellular_componentperoxisome
GO:0004321molecular_functionfatty-acyl-CoA synthase activity
GO:0016207molecular_function4-coumarate-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11459.1.S1_at--941--3391Chr03:2862359..2862383 (25 bp)
CAGCTTATCGCCCAAGTGAGATCAT
LOC_Os03g05780
Os.11459.1.S1_at--541--531Chr03:2862353..2862377 (25 bp)
ATCGCCCAAGTGAGATCATCCAAGT
LOC_Os03g05780
Os.11459.1.S1_at--78--6051Chr03:2862342..2862366 (25 bp)
GAGATCATCCAAGTTGTAGCAAATT
LOC_Os03g05780
Os.11459.1.S1_at--783--10011Chr03:2862326..2862350 (25 bp)
TAGCAAATTAATCTGCTTCTCTTTG
LOC_Os03g05780
Os.11459.1.S1_at--495--9551Chr03:2862307..2862331 (25 bp)
TCTTTGGGAATCAATCGTGCTTATG
LOC_Os03g05780
Os.11459.1.S1_at--18--4011Chr03:2862292..2862316 (25 bp)
CGTGCTTATGTTTTGCCTTGATTCA
LOC_Os03g05780
Os.11459.1.S1_at--143--6811Chr03:2862283..2862307 (25 bp)
GTTTTGCCTTGATTCAGCCATTTTC
LOC_Os03g05780
Os.11459.1.S1_at--230--1691Chr03:2862268..2862292 (25 bp)
AGCCATTTTCAAAACTTGTCCGCGA
LOC_Os03g05780
Os.11459.1.S1_at--404--2511Chr03:2862256..2862280 (25 bp)
AACTTGTCCGCGAAGGTTTATGTAG
LOC_Os03g05780
Os.11459.1.S1_at--256--5371Chr03:2862225..2862249 (25 bp)
GAAGACCACGTGAATGTATGATGTA
LOC_Os03g05780
Os.11459.1.S1_at--742--6891Chr03:2862203..2862227 (25 bp)
GTATCAGAATGGAACCCCCATACTG
LOC_Os03g05780
Target Sequence 
CAGCTTATCGCCCAAGTGAGATCATCCAAGTTGTAGCAAATTAATCTGCTTCTCTTTGGGAATCAATCGTGCTTATGTTT
TGCCTTGATTCAGCCATTTTCAAAACTTGTCCGCGAAGGTTTATGTAGCATTGTGAAGACCACGTGAATGTATGATGTAT
CAGAATGGAACCCCCATACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis