Browse Element(s) Details


Os.11463.1.S1_at

Description gb:AK070095.1
DB_XREF= gi:32980119
TID=Os.11463.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11463 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042J09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042J09, full insert sequence.
FL= gb:AK070095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2183011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21800Os.26538.1.S1_at11/113+12430913..12435162Transcription factor RF2b, putative, expressed
LOC_Os03g21800OsAffx.14261.4.S1_x_at10/113+12430913..12435162Transcription factor RF2b, putative, expressed
LOC_Os03g21810Os.24536.1.S1_at11/113+12437275..12447855Insulinase containing protein, expressed
LOC_Os03g21810OsAffx.18721.1.S1_at1/113+12437275..12447855Insulinase containing protein, expressed
LOC_Os03g21820Os.2367.1.S1_at11/113+12448139..12449435Alpha-expansin 10 precursor, putative, expressed
LOC_Os03g21830Os.11463.1.S1_at11/113+12456850..12458968expressed protein
LOC_Os03g21840Os.48943.1.S1_at8/113+12459687..12461931reticulon family protein, putative, expressed
LOC_Os03g21850Os.7258.1.S1_at11/113+12471766..12478845expressed protein
LOC_Os03g21860OsAffx.25185.1.S1_at11/113+12483360..12485699hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11463.1.S1_at--432--7931Chr03:12457883..12458009 (25 bp)
GGATTACTCCAGCATTCAAGCTTCC
LOC_Os03g21830
Os.11463.1.S1_at--929--7391Chr03:12458020..12458044 (25 bp)
GTGATACACACTGTTGGGCCCATAT
LOC_Os03g21830
Os.11463.1.S1_at--525--8151Chr03:12458052..12458076 (25 bp)
GGACAAGCAACCTGAGGTCTCCTTA
LOC_Os03g21830
Os.11463.1.S1_at--382--4951Chr03:12458232..12458256 (25 bp)
GCATTACCTGCAATTTCTTGTGGTG
LOC_Os03g21830
Os.11463.1.S1_at--454--7491Chr03:12458251..12458374 (25 bp)
GTGGTGTTTATCGTTATCCTCCAAA
LOC_Os03g21830
Os.11463.1.S1_at--624--6591Chr03:12458387..12458411 (25 bp)
GATTGCTGTTTCTACTGCACAACGA
LOC_Os03g21830
Os.11463.1.S1_at--769--691Chr03:12458659..12458683 (25 bp)
ATGAGCTCTATGATATCTGGCGTGA
LOC_Os03g21830
Os.11463.1.S1_at--482--7391Chr03:12458731..12458755 (25 bp)
GTGATGAGGCTTACTTCCTGGTGTA
LOC_Os03g21830
Os.11463.1.S1_at--535--10631Chr03:12458745..12458769 (25 bp)
TTCCTGGTGTAAGTCTGGTGCCGAC
LOC_Os03g21830
Os.11463.1.S1_at--469--3991Chr03:12458770..12458794 (25 bp)
CGTGCCGTAGTTGCCGTCGTTAATA
LOC_Os03g21830
Os.11463.1.S1_at--61--271Chr03:12458792..12458816 (25 bp)
ATATGAGCACTAGAGCCGGTTGGCC
LOC_Os03g21830
Target Sequence 
GGATTACTCCAGCATTCAAGCTTCCTGTTTCCCGCGTGATACACACTGTTGGGCCCATATATGATATGGACAAGCAACCT
GAGGTCTCCTTAAATAATGCCTACACAAATAGCTTGAAGCTCGCTAAACAGAATGGTATTCAATACATTGCATTACCTGC
AATTTCTTGTGGTGTTTATCGTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATG
ATATTAAAGAGGTACACTTTGTTCTGTTTTCTGATGAGCTCTATGATATCTGGCGTGAGACTGCCAAGGAATTTCTGTCA
CAATTTGAGAAATGAATTGTGAACTGTGATGAGGCTTACTTCCTGGTGTAAGTCTGGTGCCGACCGTGCCGTAGTTGCCG
TCGTTAATATGAGCACTAGAGCCGGTTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis