Browse Element(s) Details


Os.11535.1.S1_at

Description gb:AB011262.1
DB_XREF= gi:5360220
TID=Os.11535.1
CNT=43
FEA=FLmRNA
TIER=FL+Stack
STK=16
UG=Os.11535 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for nuclear transport factor 2 (NTF2), complete cds.
PROD=nuclear transport factor 2 (NTF2)
FL= gb:AK065141.1 gb:AB011262.1 gb:AK119730.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4200010/11Nuclear transport factor 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41950Os.4153.1.S1_a_at11/118+26374337..26379418SRF-type transcription factor family protein, expressed
LOC_Os08g41960OsAffx.17465.1.S1_at10/118+26386299..26388857SRF-type transcription factor family protein, expressed
LOC_Os08g41970OsAffx.6110.1.S1_at10/118+26394119..26395876hypothetical protein
LOC_Os08g41980NANA8+26397475..26397696hypothetical protein
LOC_Os08g41990Os.51459.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g41990Os.10144.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g42000Os.11535.1.S1_at10/118+26402370..26404462Nuclear transport factor 2, putative, expressed
LOC_Os08g42010Os.48148.1.S1_at10/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42010Os.33974.1.S1_at1/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42020Os.53300.1.S1_at10/118+26410379..26412570expressed protein
LOC_Os08g42030Os.10394.2.S1_at11/118+26413904..26416963Peroxidase 35 precursor, putative, expressed
LOC_Os08g42040Os.12758.1.S1_at11/118+26421316..26424220Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g42050Os.15173.1.S1_at11/118+26426066..26429311emp24/gp25L/p24 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006606biological_processprotein import into nucleus
GO:0006913biological_processnucleocytoplasmic transport
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003723molecular_functionRNA binding
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11535.1.S1_at--740--1911Chr08:26404270..26404294 (25 bp)
ACGGGTCCATGCTCACCTTCGAGGG
LOC_Os08g42000
Os.11535.1.S1_at--414--9731NONE
TCAAGTTCTCCCAGATGTTCCAGCT
NONE
Os.11535.1.S1_at--495--9311Chr08:26402640..26402664 (25 bp)
TCCCGCTGGAGGCAACTTCTATGTG
LOC_Os08g42000
Os.11535.1.S1_at--655--5451Chr08:26402613..26402637 (25 bp)
GAACGACATGTTCCGTCTGAACTAT
LOC_Os08g42000
Os.11535.1.S1_at--797--10051Chr08:26402571..26402595 (25 bp)
TAGTCATCCATCAACGTACTGGGCC
LOC_Os08g42000
Os.11535.1.S1_at--937--1951Chr08:26402554..26402578 (25 bp)
ACTGGGCCAGTGTTTTATGTTGAAA
LOC_Os08g42000
Os.11535.1.S1_at--1062--6331Chr08:26402523..26402547 (25 bp)
GATGCTGTTGCTCTTTTGATTGTTT
LOC_Os08g42000
Os.11535.1.S1_at--383--6591Chr08:26402506..26402530 (25 bp)
GATTGTTTATCGACTGGTGCAAATT
LOC_Os08g42000
Os.11535.1.S1_at--462--5691Chr08:26402459..26402483 (25 bp)
GACTATGCACCTTCTGGATTTGTTC
LOC_Os08g42000
Os.11535.1.S1_at--887--8791Chr08:26402439..26402463 (25 bp)
TGTTCTTCTATGTTTCTCCCATGAA
LOC_Os08g42000
Os.11535.1.S1_at--950--5451Chr08:26402417..26402441 (25 bp)
GAACTGTGGTATGGAGGCACCATTT
LOC_Os08g42000
Target Sequence 
ACGGGTCCATGCTCACCTTCGAGGGCCAGCAGTTTCTCGGCGCCGCCGCCATCGCCGGCAAGCTCGGCTCCCTCCCCTTC
GCGCAGTGCCACCACGACATCAACACCGTCGACTGCCAGCCGTCGGGGCCGCAGGGCGGCATGCTCGTCTTCGTCTCCGG
ATCCCTCCGCACCGGCCCCGACGAGCACCCCCTCAAGTTCTCCCAGATGTTCCAGCTGCTTCCCGCTGGAGGCAACTTCT
ATGTGCAGAACGACATGTTCCGTCTGAACTATGGTTAAGGAAAGCTGGATAGTCATCCATCAACGTACTGGGCCAGTGTT
TTATGTTGAAACTATGAGATGCTGTTGCTCTTTTGATTGTTTATCGACTGGTGCAAATTATTGCAAGAAATGNTGTTAAA
AGACTATGCACCTTCTGGATTTGTTCTTCTATGTTTCTCCCATGAACTGTGGTATGGAGGCACCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis