Browse Element(s) Details


Os.11550.1.S1_at

Description gb:AK070875.1
DB_XREF= gi:32980898
TID=Os.11550.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11550 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075H05, full insert sequence.
FL= gb:AK070875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0577011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05730Os.4689.1.S1_at11/113+2831406..2835792Cell division cycle protein 48 homolog, putative, expressed
LOC_Os03g05740Os.4190.1.S1_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05740Os.48663.1.A1_s_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05750Os.49591.1.S1_at9/113+2845490..2847256heavy metal-associated domain containing protein, expressed
LOC_Os03g05760Os.26417.1.S1_at11/113+2849474..2854541Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os03g05770Os.11550.1.S1_at11/113+2857942..2859941Peroxidase family protein, expressed
LOC_Os03g05780Os.11459.1.S1_at11/113+2862160..2867033AMP-binding enzyme family protein, expressed
LOC_Os03g05790Os.38395.3.S1_x_at11/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.2.S1_x_at9/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.4.S1_x_at7/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05790Os.38395.1.S1_at1/113+2867919..2872710transposon protein, putative, Mutator sub-class
LOC_Os03g05800Os.56167.1.S1_at11/113+2876588..2879385expressed protein
LOC_Os03g05806Os.48438.1.S1_at11/113+2880707..2885725RNA pseudouridylate synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11550.1.S1_at--391--7711Chr03:2859355..2859379 (25 bp)
GGGTGACCGCAGAAGTACCTGCCGA
LOC_Os03g05770
Os.11550.1.S1_at--1112--8131Chr03:2859420..2859444 (25 bp)
GGACAATCGTTCAGCATGGCCGGCG
LOC_Os03g05770
Os.11550.1.S1_at--1018--5731Chr03:2859476..2859500 (25 bp)
GACGGCGATGAAGAGCCAATCCTTC
LOC_Os03g05770
Os.11550.1.S1_at--1042--2791Chr03:2859561..2859585 (25 bp)
AAGATGCCGCGCTGCTAGCTGAGCC
LOC_Os03g05770
Os.11550.1.S1_at--528--8851Chr03:2859601..2859625 (25 bp)
TGATCGAGCGCGCATTGCCATTTAT
LOC_Os03g05770
Os.11550.1.S1_at--21--4591Chr03:2859610..2859634 (25 bp)
GCGCATTGCCATTTATCGTTTTTGA
LOC_Os03g05770
Os.11550.1.S1_at--649--511Chr03:2859624..2859648 (25 bp)
ATCGTTTTTGATTTTCTCACTCTCT
LOC_Os03g05770
Os.11550.1.S1_at--230--1351Chr03:2859664..2859688 (25 bp)
AGAAGGGACGAGCATACTACTACCG
LOC_Os03g05770
Os.11550.1.S1_at--236--2031Chr03:2859679..2859703 (25 bp)
ACTACTACCGCTAATTACTAGGCTT
LOC_Os03g05770
Os.11550.1.S1_at--650--1591Chr03:2859751..2859775 (25 bp)
AGCTCGATGATATTTTCTCTTTTCA
LOC_Os03g05770
Os.11550.1.S1_at--838--91Chr03:2859809..2859833 (25 bp)
ATTCGTTGCCAACTCAATCTGGCTG
LOC_Os03g05770
Target Sequence 
GGGTGACCGCAGAAGTACCTGCCGACGAGGCGGCNCCGGCGNCAAAGAAGCCGAGGGCGATGGGCGGACAATCGTTCAGC
ATGGCCGGCGCCGGCNCCGGCGGCGAGCCGGCGAAGAAGTCGACGGCGATGAAGAGCCAATCCTTCAGCNTGGCGGNCCA
GCCGCAACAGTAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGCCGCGCTGCTAGCTGAGCCGTTCGCACG
GCGGCCTGATCGAGCGCGCATTGCCATTTATCGTTTTTGATTTTCTCACTCTCTNTCTCGCCTGTTTGTAGAAGGGACGA
GCATACTACTACCGCTAATTACTAGGCTTAATTTTGCAAGTAATGTCGTGTCGAGTTTTTTTTAACAGCGACCAAAAGCT
CGATGATATTTTCTCTTTTCATTTTCCCTTTTTTTTTTGTCATTCTTGTTAAGAATTCGTTGCCAACTCAATCTGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis