Browse Element(s) Details


Os.11565.1.S1_at

Description gb:AK104730.1
DB_XREF= gi:32989939
TID=Os.11565.1
CNT=83
FEA=FLmRNA
TIER=FL+Stack
STK=29
UG=Os.11565 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peroxidase (OSJNBa0015O22.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C06, full insert sequence.
FL= gb:AK104730.1 gb:AK061462.1 gb:AK104633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0204011/11Peroxidase 53 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02000OsAffx.20808.2.S1_s_at11/1110+616305..617447Transferase family protein
LOC_Os10g02000OsAffx.20808.2.S1_at11/1110+616305..617447Transferase family protein
LOC_Os10g02000OsAffx.20808.1.S1_x_at3/1110+616305..617447Transferase family protein
LOC_Os10g02010Os.45976.1.S1_x_at2/1110+619464..623176transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g02020NANA10+627966..628403hypothetical protein
LOC_Os10g02030Os.46306.1.S1_x_at2/1110+629994..635192transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g02040Os.11565.1.S1_at11/1110+639761..643042Peroxidase 53 precursor, putative, expressed
LOC_Os10g02050NANA10+647765..648052hypothetical protein
LOC_Os10g02060OsAffx.27688.1.S1_at1/1110+660396..660691NA
LOC_Os10g02070Os.158.1.S1_at11/1110+661285..663015Peroxidase N precursor, putative, expressed
LOC_Os10g02080OsAffx.30237.1.S1_x_at11/1110+664246..667474POT family protein
LOC_Os10g02080OsAffx.30237.2.S1_x_at2/1110+664246..667474POT family protein
LOC_Os10g02080Os.46546.2.S1_x_at1/1110+664246..667474POT family protein

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11565.1.S1_at--1127--9211Chr10:640318..640342 (25 bp)
TCCAGTCGGACCAGGAGCTCAAGTC
LOC_Os10g02040
Os.11565.1.S1_at--720--3631Chr10:640218..640242 (25 bp)
CTTCGCGCAGTCCATGATCAACATG
LOC_Os10g02040
Os.11565.1.S1_at--244--9691Chr10:640177..640201 (25 bp)
TCACTGACCCTTCCCTGGGTGAGGT
LOC_Os10g02040
Os.11565.1.S1_at--105--7771Chr10:640160..640184 (25 bp)
GGTGAGGTCCGGACCAACTGCAGAA
LOC_Os10g02040
Os.11565.1.S1_at--997--7691Chr10:640135..640159 (25 bp)
GGGTCAATTAATTATCACTTCATGT
LOC_Os10g02040
Os.11565.1.S1_at--807--5331Chr10:640087..640111 (25 bp)
GAAGTAACCAACGTCATCATGTCAA
LOC_Os10g02040
Os.11565.1.S1_at--344--8691Chr10:639995..640019 (25 bp)
TGTGCATAGTTAATTAAGCGCGCTT
LOC_Os10g02040
Os.11565.1.S1_at--586--2671Chr10:639980..640004 (25 bp)
AAGCGCGCTTGCATTTGTGAGAAAT
LOC_Os10g02040
Os.11565.1.S1_at--17--451Chr10:639872..639896 (25 bp)
ATCTATTATGATCACGCGCATCCAG
LOC_Os10g02040
Os.11565.1.S1_at--1019--9671Chr10:639861..639885 (25 bp)
TCACGCGCATCCAGCTTAATAATTG
LOC_Os10g02040
Os.11565.1.S1_at--840--9971Chr10:639807..639831 (25 bp)
TACCATGATTGTGTTTGTTCCAAAT
LOC_Os10g02040
Target Sequence 
TCCAGTCGGACCAGGAGCTCAAGTCGGCGCCGGAGGCGACCGGGACGACGGCGCCCATCGTCGACCGCTTCGCCACCAGC
CAGGCCGCCTTCTTCCGCAGCTTCGCGCAGTCCATGATCAACATGGGCAACCTCTCCCCTGTCACTGACCCTTCCCTGGG
TGAGGTCCGGACCAACTGCAGAAGGGTCAATTAATTATCACTTCATGTATGACGTTGGTTAGTTTAAAATTGAAGTAACC
AACGTCATCATGTCAAACATAATTAATTACGTATGTGTCGATTATTATTGTTGTTATTATTAGCAAAATGAGAGAGATTT
ATTTGTGCATAGTTAATTAAGCGCGCTTGCATTTGTGAGAAATATTAGTAGTCCAGCTTAATTAATCAAGGAGAAGAGGA
TGGAAAAAAGAATGTACATGTGTTCAATTTGGATGTGTGATCAAGGATCTATTATGATCACGCGCATCCAGCTTAATAAT
TGGCCAATTGGTTGACCAATGTAATTGTACGTACCATGATTGTGTTTGTTCCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis