Browse Element(s) Details


Os.11723.2.S1_s_at

Description gb:AK073961.1
DB_XREF= gi:32983984
TID=Os.11723.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11723 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative CELL DIVISION CONTROL PROTEIN 2 HOMOLOG 1 (OJ1384D03.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074A14, full insert sequence.
FL= gb:AK073961.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0268011/11Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g018508/11Cell division control protein 2 homolog 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02640Os.52411.1.S1_at11/113+952949..956757expressed protein
LOC_Os03g02650Os.55877.1.S1_at11/113+957161..958115AP2 domain containing protein, expressed
LOC_Os03g02660Os.53330.1.S1_at11/113+964116..968105expressed protein
LOC_Os03g02660OsAffx.12144.2.A1_s_at11/113+964116..968105expressed protein
LOC_Os03g02660OsAffx.26471.1.A1_at1/113+964116..968105expressed protein
LOC_Os03g02670Os.27602.1.S1_at11/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02670Os.7088.1.S1_at1/113+969463..973054UDP-galactose transporter, putative, expressed
LOC_Os03g02680Os.11723.1.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.2.S1_s_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.3.S1_at11/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02680Os.11723.4.S1_x_at10/113+975945..979582Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g02690OsAffx.3115.1.S1_x_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02690Os.49168.1.S1_s_at11/113+982673..985614Dihydrodipicolinate reductase, C-terminus family protein, expressed
LOC_Os03g02700OsAffx.12714.1.S1_x_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02700OsAffx.12714.1.S1_at11/113+986728..988856GMC oxidoreductase family protein
LOC_Os03g02710Os.20342.1.S1_at11/113+993651..998551Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os03g02720Os.24783.1.A1_at11/113+999803..1002876expressed protein
LOC_Os03g02730Os.32472.1.S1_at10/113+1003077..1005106ABR017Cp, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000086biological_processG2/M transition of mitotic cell cycle
GO:0000087biological_processM phase of mitotic cell cycle
GO:0000910biological_processcytokinesis
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0009826biological_processunidimensional cell growth
GO:0016572biological_processhistone phosphorylation
GO:0042023biological_processDNA endoreduplication
GO:0000307cellular_componentcyclin-dependent protein kinase holoenzyme complex
GO:0009574cellular_componentpreprophase band
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11723.2.S1_s_at--16--3292Chr03:978921..978945 (25 bp)
CAAATGAACAAAGTTGGCCAGGAGT
LOC_Os03g02680
Os.11723.2.S1_s_at--1027--2312Chr03:978930..978954 (25 bp)
AAAGTTGGCCAGGAGTTAGCTCATT
LOC_Os03g02680
Os.11723.2.S1_s_at--1053--3472Chr03:979085..979109 (25 bp)
CAGGATCTTGCAACTATTGTCCCTA
LOC_Os03g02680
Os.11723.2.S1_s_at--595--4191Chr03:979323..979347 (25 bp)
CCCTGCTATGGCTTTACATTGGATT
LOC_Os03g02680
Os.11723.2.S1_s_at--943--9071Chr03:979326..979350 (25 bp)
TGCTATGGCTTTACATTGGATTGGC
LOC_Os03g02680
Os.11723.2.S1_s_at--541--10111Chr03:979356..979380 (25 bp)
TATGGGCTGGGCTCCTCATTTCATT
LOC_Os03g02680
Os.11723.2.S1_s_at--929--7272Chr03:979396..979420 (25 bp)
GTGCCCTTCGTTTGGGCATTTTTGT
LOC_Os03g02680
Os.11723.2.S1_s_at--222--3652Chr03:979401..979425 (25 bp)
CTTCGTTTGGGCATTTTTGTCATTC
LOC_Os03g02680
Os.11723.2.S1_s_at--118--6872Chr03:979405..979429 (25 bp)
GTTTGGGCATTTTTGTCATTCAGCT
LOC_Os03g02680
Os.11723.2.S1_s_at--295--8292Chr03:979410..979434 (25 bp)
GGCATTTTTGTCATTCAGCTGGATA
LOC_Os03g02680
Os.11723.2.S1_s_at--473--8732Chr03:979418..979442 (25 bp)
TGTCATTCAGCTGGATATTTCAAAT
LOC_Os03g02680
Target Sequence 
CAAATGAACAAAGTTGGCCAGGAGTTAGCTCATTACCTGACTACAAGTCTGCTTTCCCCAAGTGGCAAGCACAGGATCTT
GCAACTATTGTCCCTACTCTTGACCCTGCTGGTTTGGACCTTCTCTCTAAAATGCTTCGGTACGAGCCAAACAAAAGGAT
CACAGCTAGACAGGCTCTTGAGCATGAATACTTCAAGGACCTTGAGATGGTACAATGACCCTGCTATGGCTTTACATTGG
ATTGGCATATGTATGGGCTGGGCTCCTCATTTCATTCCTTCTGTGAACGCTGTGCCCTTCGTTTGGGCATTTTTGTCATT
CAGCTGGATATTTCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11723.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis