Browse Element(s) Details


Os.11731.1.S1_at

Description gb:AK066244.1
DB_XREF= gi:32976262
TID=Os.11731.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013055L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055L05, full insert sequence.
FL= gb:AK066244.1 gb:AK059176.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2829011/11Ran-binding protein 1 homolog c, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28240OsAffx.1196.1.S1_at2/115+16459608..16460894hypothetical protein
LOC_Os05g28240OsAffx.1196.1.S1_x_at1/115+16459608..16460894hypothetical protein
LOC_Os05g28250OsAffx.12179.1.S1_at2/115+16461595..16464624Zinc knuckle family protein
LOC_Os05g28250OsAffx.12179.1.S1_x_at1/115+16461595..16464624Zinc knuckle family protein
LOC_Os05g28260OsAffx.4452.1.S1_at10/115+16465997..16468463hypothetical protein
LOC_Os05g28270OsAffx.4453.1.S1_at11/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28270OsAffx.28003.2.S1_x_at2/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28270OsAffx.28003.1.S1_at1/115+16470133..16472134hAT family dimerisation domain containing protein
LOC_Os05g28280Os.1378.1.S1_at11/115+16474078..16477646DNA-binding protein, 42 kDa containing protein, expressed
LOC_Os05g28290Os.11731.1.S1_at11/115+16481663..16484384Ran-binding protein 1 homolog c, putative, expressed
LOC_Os05g28300Os.18379.1.S2_at11/115+16488396..16499850expressed protein
LOC_Os05g28300Os.18379.1.S1_at10/115+16488396..16499850expressed protein
LOC_Os05g28310OsAffx.14860.1.S1_at11/115+16502029..16502646hypothetical protein
LOC_Os05g28320OsAffx.4454.1.S1_at11/115+16504231..16505142Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g28330OsAffx.4455.1.S1_at9/115+16506391..16509122hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000060biological_processprotein import into nucleus, translocation
GO:0005515molecular_functionprotein binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11731.1.S1_at--197--2611Chr05:16483808..16483832 (25 bp)
AACCGAGGAAGATTCGTCTGCCGCT
LOC_Os05g28290
Os.11731.1.S1_at--323--2271Chr05:16483926..16483950 (25 bp)
AAATCAGCTGCCACCTCAGAGTAAT
LOC_Os05g28290
Os.11731.1.S1_at--39--9751Chr05:16483947..16483971 (25 bp)
TAATCAGCAGTGTGTTACCTCCAGA
LOC_Os05g28290
Os.11731.1.S1_at--367--9971Chr05:16483962..16483986 (25 bp)
TACCTCCAGAACACTAGTGCTCGGT
LOC_Os05g28290
Os.11731.1.S1_at--333--9771Chr05:16483995..16484019 (25 bp)
TAAGTTTGTCAGTGCTTCCCGTCTA
LOC_Os05g28290
Os.11731.1.S1_at--795--7111Chr05:16484081..16484105 (25 bp)
GTCAGGGTCATCTTTACCTATTGGG
LOC_Os05g28290
Os.11731.1.S1_at--648--1731Chr05:16484096..16484120 (25 bp)
ACCTATTGGGCGTTCACTTGTTATT
LOC_Os05g28290
Os.11731.1.S1_at--1137--7411Chr05:16484133..16484157 (25 bp)
GTGTATGGTTTCTGCTTAGAGTCGC
LOC_Os05g28290
Os.11731.1.S1_at--715--6091Chr05:16484151..16484175 (25 bp)
GAGTCGCAGGTTGGCTTTTGGATCA
LOC_Os05g28290
Os.11731.1.S1_at--595--1031Chr05:16484175..16484199 (25 bp)
AGGTCTGTTCGGATCTCGCTTTTAT
LOC_Os05g28290
Os.11731.1.S1_at--549--10251Chr05:16484244..16484268 (25 bp)
TTTGGGTCCGAGTTACGAGTATCTT
LOC_Os05g28290
Target Sequence 
AACCGAGGAAGATTCGTCTGCCGCTGGCCTTCTGGAGAAACTCAGCGTAACTGAAAAGAAGTCTGAGGAAGTGGCGACAA
AGGAGGAATCGACCGAAGCAGTCAAGGAGACTGACACCAAATCAGCTGCCACCTCAGAGTAATCAGCAGTGTGTTACCTC
CAGAACACTAGTGCTCGGTGGGAAGGGTAAGTTTGTCAGTGCTTCCCGTCTATGGAAGTTAAAAGTCGTTAGCCATGAGC
TATGTTGAGAACATTTGGGCAGAGTCGGAAGATGTCAGGGTCATCTTTACCTATTGGGCGTTCACTTGTTATTATTTATT
TGTTTGTGTATGGTTTCTGCTTAGAGTCGCAGGTTGGCTTTTGGATCAGGTCTGTTCGGATCTCGCTTTTATCGAGAACA
CGAAATGTAGTCCATGAGTAGGACGAGTTGGAACGTTTTGGGTCCGAGTTACGAGTATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis