Browse Element(s) Details


Os.11775.1.S2_at

Description gb:AK120741.1
DB_XREF= gi:37990364
TID=Os.11775.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11775 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like kinase (P0439E07.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003P18, full insert sequence.
FL= gb:AK120741.1 gb:AK109885.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5392011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53890Os.6199.2.A1_at11/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53890Os.6199.3.S1_at5/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53900Os.23236.1.S1_at11/111+31319259..31324028Elongation factor 2, putative, expressed
LOC_Os01g53910Os.34512.1.S1_at11/111+31324833..31326046NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g53920Os.11775.1.S2_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_x_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.1.S1_a_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53930Os.5547.1.S1_s_at11/111+31336016..31340802Hexokinase 1, putative, expressed
LOC_Os01g53930OsAffx.11594.1.S1_at8/111+31336016..31340802Hexokinase 1, putative, expressed
LOC_Os01g53940OsAffx.23783.1.S1_at10/111+31342756..31344464expressed protein
LOC_Os01g53950NANA1+31346241..31346545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.1.S1_x_at10/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.3.S1_x_at4/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.2.S1_x_at3/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.5.S1_x_at2/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53970OsAffx.2327.1.S1_at11/111+31358184..31358780hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11775.1.S2_at--109--8451Chr01:31336071..31336095 (25 bp)
GGCCAACCATGAAGGACGTGCTGCA
LOC_Os01g53920
Os.11775.1.S2_at--1073--5031Chr01:31336093..31336117 (25 bp)
GCAGATCCTGGTCAAATGCTCCGAG
LOC_Os01g53920
Os.11775.1.S2_at--178--5891Chr01:31336252..31336276 (25 bp)
GAGCGATTTCGATTCCATTGTCTGA
LOC_Os01g53920
Os.11775.1.S2_at--259--9171Chr01:31336294..31336318 (25 bp)
TGCCGCACCTTTACCTACTAGGAAA
LOC_Os01g53920
Os.11775.1.S2_at--104--7891Chr01:31336339..31336363 (25 bp)
GGTTAGTCTATGAGCCAGCACTGCA
LOC_Os01g53920
Os.11775.1.S2_at--170--5871Chr01:31336350..31336374 (25 bp)
GAGCCAGCACTGCACTGCATGAATA
LOC_Os01g53920
Os.11775.1.S2_at--736--6431Chr01:31336407..31336431 (25 bp)
GATCATACTCTATTACCTTACCTTG
LOC_Os01g53920
Os.11775.1.S2_at--376--9971Chr01:31336425..31336449 (25 bp)
TACCTTGATGGTACACTTCTTAGTA
LOC_Os01g53920
Os.11775.1.S2_at--718--2031Chr01:31336449..31336473 (25 bp)
ACTATTTTGTTAGCTGCTCGCGGCT
LOC_Os01g53920
Os.11775.1.S2_at--694--9091Chr01:31336463..31336487 (25 bp)
TGCTCGCGGCTGATCAGATCATTTG
LOC_Os01g53920
Os.11775.1.S2_at--54--2951Chr01:31336586..31336610 (25 bp)
AAGGCTACACGCGAAACCGCTGTGA
LOC_Os01g53920
Target Sequence 
GGCCAACCATGAAGGACGTGCTGCAGATCCTGGTCAAATGCTCCGAGCAGACGCACCAGAAATGCAAGGCGGAGAGCGGG
CAGGAGGAGTACGAAGTGGCGCCGCTGTTGCTGCCGCAACGAGGCAGCCGCCGGAAACAGCCCGCGAAGGCCAAAGGAGC
AGACGACGACGCTGACGAGAGGAGCGATTTCGATTCCATTGTCTGAAGAAAGGAGCAGAGCACTGCCGCACCTTTACCTA
CTAGGAAACACTGATGTGAGCAGGGAATGGTTAGTCTATGAGCCAGCACTGCACTGCATGAATATAAACGCCATATTAGA
CAGTACTAGAAAAGATGATCATACTCTATTACCTTACCTTGATGGTACACTTCTTAGTACTATTTTGTTAGCTGCTCGCG
GCTGATCAGATCATTTGAGCTTTGATACCAGTGTGTAAGAGTACATACATAGTTCAAACTGACATACGAAAAGTGAAATT
ATGTCCCCCTCTTTATTCTGAAATCTGAATGACAAAAGGCTACACGCGAAACCGCTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11775.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis