Browse Element(s) Details


Os.11784.1.S1_at

Description gb:AU056525
DB_XREF= gi:4715408
DB_XREF=AU056525
CLONE=S20658_1A
TID=Os.11784.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11784 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative CRK1 protein (P0482D04.8), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7013011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70080Os.50370.1.S1_at11/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70080Os.47363.1.A1_at4/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70090Os.18822.1.A1_at11/111+40890382..40893189enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os01g70100Os.22715.1.S1_at10/111+40893532..40896618DHHC zinc finger domain containing protein, expressed
LOC_Os01g70110Os.14047.2.S1_x_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_a_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.2.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70120Os.34730.1.S1_at11/111+40911232..40912316expressed protein
LOC_Os01g70120Os.34730.2.S1_x_at10/111+40911232..40912316expressed protein
LOC_Os01g70130Os.11784.1.S1_at11/111+40912299..40918122Protein kinase domain containing protein, expressed
LOC_Os01g70140Os.18673.1.S1_at9/111+40922852..40925944Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g70140OsAffx.2262.1.S1_x_at1/111+40922852..40925944Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g70150OsAffx.21844.1.S1_at5/111+40928143..40929262hypothetical protein
LOC_Os01g70160Os.9535.2.S1_x_at11/111+40934386..40937146Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g70170Os.8049.1.S1_a_at11/111+40937374..40940298Transaldolase 2, putative, expressed
LOC_Os01g70180Os.34126.1.S1_at11/111+40942566..40946479exostosin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11784.1.S1_at--763--9671Chr01:40912847..40912871 (25 bp)
TCACCTAGATGCGTCAATCGGGTTT
LOC_Os01g70130
Os.11784.1.S1_at--1026--9411Chr01:40912830..40912854 (25 bp)
TCGGGTTTAGTCTCGATTCATCGGC
LOC_Os01g70130
Os.11784.1.S1_at--572--9611Chr01:40912813..40912837 (25 bp)
TCATCGGCTGATGTTTCCACGGAAC
LOC_Os01g70130
Os.11784.1.S1_at--196--8171Chr01:40912793..40912817 (25 bp)
GGAACAGTTCTTCACATCATCAGTT
LOC_Os01g70130
Os.11784.1.S1_at--439--6351Chr01:40912754..40912778 (25 bp)
GATGCCTAGCCTAATATTTGGCCAC
LOC_Os01g70130
Os.11784.1.S1_at--640--211Chr01:40912739..40912763 (25 bp)
ATTTGGCCACATGAAGTCTTACCTG
LOC_Os01g70130
Os.11784.1.S1_at--185--8891Chr01:40912728..40912752 (25 bp)
TGAAGTCTTACCTGAATAGTCCAAA
LOC_Os01g70130
Os.11784.1.S1_at--702--2751Chr01:40912702..40912726 (25 bp)
AAGAACACACACAAGGCAAAGCCAG
LOC_Os01g70130
Os.11784.1.S1_at--801--5131Chr01:40912687..40912711 (25 bp)
GCAAAGCCAGGCCTCAGTATGCCAC
LOC_Os01g70130
Os.11784.1.S1_at--1073--5591Chr01:40912566..40912590 (25 bp)
GAAATTCAGTAGGTGCAGTCAAATG
LOC_Os01g70130
Os.11784.1.S1_at--614--1911Chr01:40912345..40912369 (25 bp)
ACGTGGTAGACCCTGAATACATTCA
LOC_Os01g70130
Target Sequence 
TCACCTAGATGCGTCAATCGGGTTTAGTCTCGATTCATCGGCTGATGTTTCCACGGAACAGTTCTTCACATCATCAGTTG
TGGAGCTAAAGAAGATGCCTAGCCTAATATTTGGCCACATGAAGTCTTACCTGAATAGTCCAAAGAAGAACACACACAAG
GCAAAGCCAGGCCTCAGTATGCCACCTTCCGCTGTTNTCATTGGCGCTTTCAAGCCATATTNGCTTGGGCATCCAATGGA
GGTGAGAAGGAAGAACAGGGATCAGTTCAGAACCAAAGGAAGAAATTCAGTAGGTGCAGTCAAATGACAAGCTAATTATA
TTCATCTTTNTTTTTTTGGCCCTCNCATCACAGTAGCTGTTCATTTAAATNTGCAAATGATAGGCAATNCCTGTATAGTT
CAGAGAGTATATGAAAGNGCGANGTTGTGAATAATGCATTCATGTATGATAGTTNACAAAATTTCNCTGGAAATCATAGG
CAGTTCAGTAAAAAAAAATCAAGAACGTGGTAGACCCTGAATACATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis