Browse Element(s) Details


Os.11791.1.S1_at

Description gb:AK070733.1
DB_XREF= gi:32980756
TID=Os.11791.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11791 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0435H01.24 (P0435H01.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063A20, full insert sequence.
FL= gb:AK059617.1 gb:AK070733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5306011/11Mpv17/PMP22 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53000Os.953.1.S2_at11/111+30786855..30791311Trehalose synthase, putative, expressed
LOC_Os01g53000Os.953.1.S1_at11/111+30786855..30791311Trehalose synthase, putative, expressed
LOC_Os01g53010Os.32899.1.S1_x_at6/111+30794668..30794964expressed protein
LOC_Os01g53020Os.49277.1.S1_at10/111+30799441..30802053DnaJ domain containing protein, expressed
LOC_Os01g53030OsAffx.11579.1.S1_at7/111+30802244..30802699expressed protein
LOC_Os01g53040Os.5941.1.S1_at11/111+30806982..30809009WRKY DNA binding domain containing protein, expressed
LOC_Os01g53060Os.11791.1.S1_at11/111+30815032..30817347Mpv17/PMP22 family protein, expressed
LOC_Os01g53070Os.26700.1.S1_x_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53070Os.26700.1.S1_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53070Os.26700.2.S1_at11/111+30817723..30823570DNA polymerase III, delta subunit family protein, expressed
LOC_Os01g53090Os.37745.1.S1_at11/111+30839129..30840475Pathogen-related protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005778cellular_componentperoxisomal membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11791.1.S1_at--999--811Chr01:30816614..30816638 (25 bp)
ATGGTTCCTTTGTCTGCTCGTGTTG
LOC_Os01g53060
Os.11791.1.S1_at--273--7251Chr01:30816646..30816670 (25 bp)
GTCCTCTTGTGCCATTTTTTGGAAC
LOC_Os01g53060
Os.11791.1.S1_at--1116--9531Chr01:30816672..30816696 (25 bp)
TCTACCTGTCAACCACTATGAGCAA
LOC_Os01g53060
Os.11791.1.S1_at--261--2351Chr01:30816700..30816721 (22 bp)
AAACCTCTAGTATACCTTCAGGGCA
LOC_Os01g53060
Os.11791.1.S1_at--200--7591Chr01:30816885..30816909 (25 bp)
GGGCATGTACAAGCCTCATTTGTCA
LOC_Os01g53060
Os.11791.1.S1_at--461--771Chr01:30816916..30816940 (25 bp)
ATGTGGTTCCGTAGCAAATGTTTTG
LOC_Os01g53060
Os.11791.1.S1_at--1030--7011Chr01:30817016..30817040 (25 bp)
GTACATGGTAGAGTCACCTCACCTC
LOC_Os01g53060
Os.11791.1.S1_at--620--3151Chr01:30817078..30817102 (25 bp)
AATTCTGGTAGTGGTCTCGAGGACA
LOC_Os01g53060
Os.11791.1.S1_at--643--2111Chr01:30817136..30817160 (25 bp)
ACATGTGTGAGCCATCTACCATCTA
LOC_Os01g53060
Os.11791.1.S1_at--924--10371Chr01:30817282..30817306 (25 bp)
TTTTCACTTGTATTCCTTGCGTTTG
LOC_Os01g53060
Os.11791.1.S1_at--547--8971Chr01:30817319..30817345 (25 bp)
TGAACTCAGCTGCAGAGGCTTTTTT
LOC_Os01g53060
Target Sequence 
ATGGTTCCTTTGTCTGCTCGTGTTGCCTTCATGTCCTCTTGTGCCATTTTTTGGAACTTCTACCTGTCAACCACTATGAG
CAAGTGAAACCTCTAGTATACCTTCAGGGCATGTACAAGCCTCATTTGTCATGATACATGTGGTTCCGTAGCAAATGTTT
TGCTTGGGTTATTGTGGGACTAAATGAACTGCTACGGATGAGGGTTTGAAGGAGCTAATTTTTGCTCTGGTGGTAGAGTA
CATGGTAGAGTCACCTCACCTCCTGTGGACAATTCTGTCGCCTGCCTCGTCATTGACGGAATTCTGGTAGTGGTCTCGAG
GACAAAGTCGATGGAGAAAGAAATTGTGTTTCTCTAAACATGTGTGAGCCATCTACCATCTACCTCTAATTTGATAGGAA
AGATGCTTGTAATTTTGATCATTTGTTCAATAAGCTAAACTTGTATGCAAGTNACATACCGATACCCAGACTNNTGAATA
GAAGNACATTATTCAGNTGGNGCAATTTTCACTTGTATTCCTTGCGTTTGGTTTTGAAGTTTTGAACTCAGCTGCAGAGG
CTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis