Browse Element(s) Details


Os.11801.1.S1_at

Description gb:CB682849
DB_XREF= gi:29686574
DB_XREF=OSJNEf10J05.r
CLONE=OSJNEf10J05
TID=Os.11801.1
CNT=28
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.11801 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_567052.1 (A.thaliana) 1-acylcerol-3-phosphate acyltransferase - like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4190011/111-acyl-sn-glycerol-3-phosphate acyltransferase PLS1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41870Os.22949.1.S1_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870OsAffx.19315.1.S1_x_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11062.1.S1_at9/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11829.1.S1_at3/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.54779.1.S1_s_at1/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41880OsAffx.7379.1.S1_at10/1111+24679945..24682122Potyvirus VPg interacting protein, putative
LOC_Os11g41890Os.9816.1.S2_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41890Os.9816.1.S1_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41900Os.11801.1.S1_at11/1111+24698478..247046791-acyl-sn-glycerol-3-phosphate acyltransferase PLS1, putative, expressed
LOC_Os11g41910Os.20693.1.S1_at11/1111+24711520..24715404small GTP-binding protein domain containing protein, expressed
LOC_Os11g41910OsAffx.19316.1.S1_at10/1111+24711520..24715404small GTP-binding protein domain containing protein, expressed
LOC_Os11g41920Os.57421.1.S1_at10/1111+24716973..24721003expressed protein
LOC_Os11g41940OsAffx.19317.1.S1_at11/1111+24723877..24725972hypothetical protein
LOC_Os11g41950OsAffx.19318.1.S1_at11/1111+24729015..24729569hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005783cellular_componentendoplasmic reticulum
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11801.1.S1_at--626--6051Chr11:24699696..24699720 (25 bp)
GAGATTAGACCAATTGGCCGCCCAG
LOC_Os11g41900
Os.11801.1.S1_at--916--11Chr11:24699684..24699708 (25 bp)
ATTGGCCGCCCAGTAAAATCATTGC
LOC_Os11g41900
Os.11801.1.S1_at--114--2051Chr11:24698991..24699015 (25 bp)
ACTTTGTTTTGGTCATGTCTCCTTT
LOC_Os11g41900
Os.11801.1.S1_at--421--7151Chr11:24698975..24698999 (25 bp)
GTCTCCTTTTATATGGCGCCGTCAA
LOC_Os11g41900
Os.11801.1.S1_at--714--2691Chr11:24698952..24698976 (25 bp)
AAGCTCTTCCTATGGACTCAACTCC
LOC_Os11g41900
Os.11801.1.S1_at--520--5711Chr11:24698938..24698962 (25 bp)
GACTCAACTCCTGTCGACATGGAAA
LOC_Os11g41900
Os.11801.1.S1_at--545--7851Chr11:24698906..24698930 (25 bp)
GGTTTACGGGCCTTGGGCTCGCACT
LOC_Os11g41900
Os.11801.1.S1_at--647--3971Chr11:24698873..24698897 (25 bp)
CGGTCATGCATGTCTTCATCATGTT
LOC_Os11g41900
Os.11801.1.S1_at--118--1171Chr11:24698843..24698867 (25 bp)
AGTCAGAGCGATCGAGCTCAGCCAA
LOC_Os11g41900
Os.11801.1.S1_at--513--5911Chr11:24698830..24698854 (25 bp)
GAGCTCAGCCAAGGCGGCTCGGAAC
LOC_Os11g41900
Os.11801.1.S1_at--722--8171Chr11:24698534..24698558 (25 bp)
GGAACTTCTACATCAGTCTGGATTT
LOC_Os11g41900
Target Sequence 
GAGATTAGACCAATTGGCCGCCCAGTAAAATCATTGCTGGTGACTTTGTTTTGGTCATGTCTCCTTTTATATGGCGCCGT
CAAGCTCTTCCTATGGACTCAACTCCTGTCGACATGGAAAGGAGTCGGGTTTACGGGCCTTGGGCTCGCACTGGTGACGN
CGGTCATGCATGTCTTCATCATGTTCTCNCAGTCAGAGCGATCGAGCTCAGCCAAGGCGGCTCGGAACCGTGTCAAGAAA
GATTGAAAGAGATGAAGATAGAGTCTNCAGCTTATCAATGGGAGCTACCAATTAATTGGGTATTGAATTCATGTAGGCAA
CAAAATTGAGGGCCTAATCTTTCCTGTATAATGCACCAAAAGGGNTTCTTACAGAACTGAATGCCTGAATAGAGAGATTC
TAGGAGATTTGGTGAACTAGCAACTCTGAGCTCTGTTGTGCTGTATTTTCAGAGAATGTTTTTTTTNGGCAGAACAGGAA
TTGTACTACTTGTATTTATTGGAACTTCTACATCAGTCTGGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis