Browse Element(s) Details


Os.11810.2.S1_a_at

Description gb:AK104742.1
DB_XREF= gi:32989951
TID=Os.11810.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29042 fibrillin-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-038-E02, full insert sequence.
FL= gb:AK104742.1 gb:AK061477.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0479010/11Light-induced protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04740OsAffx.22947.1.S1_x_at8/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.2.S1_x_at5/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.3.S1_x_at4/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.5.S1_x_at2/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04750NANA9+2532705..2533927retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04760OsAffx.17571.1.S1_at11/119+2534378..2534764hypothetical protein
LOC_Os09g04770OsAffx.6176.1.S1_at11/119+2538390..2539148hypothetical protein
LOC_Os09g04780NANA9+2543661..2543897hypothetical protein
LOC_Os09g04790Os.11810.2.S1_a_at10/119+2548092..2551800Light-induced protein, chloroplast precursor, putative, expressed
LOC_Os09g04800Os.18469.1.S1_at11/119+2556031..2560139BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os09g04810Os.26358.1.S1_x_at11/119+2560858..2564526expressed protein
LOC_Os09g04810Os.26358.2.S1_at10/119+2560858..2564526expressed protein
LOC_Os09g04820OsAffx.25156.5.S1_x_at11/119+2568301..2570428hypothetical protein
LOC_Os09g04820OsAffx.25156.1.S1_x_at5/119+2568301..2570428hypothetical protein
LOC_Os09g04820OsAffx.25156.4.S1_x_at1/119+2568301..2570428hypothetical protein
LOC_Os09g04830NANA9+2571804..2575935retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04840NANA9+2576149..2578620retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11810.2.S1_a_at--83--2531Chr09:2550357..2550381 (25 bp)
AACTTCAGTGTCTACCAATGCCAAA
LOC_Os09g04790
Os.11810.2.S1_a_at--909--10611NONE
TTCGAAGTCCCAAACGTGTACAGAT
NONE
Os.11810.2.S1_a_at--137--10431Chr09:2551201..2551225 (25 bp)
TTATCGGCACTCCACAATTGACTGA
LOC_Os09g04790
Os.11810.2.S1_a_at--187--5731Chr09:2551220..2551244 (25 bp)
GACTGATTCTATTGTACTACCTGAG
LOC_Os09g04790
Os.11810.2.S1_a_at--617--1471Chr09:2551264..2551288 (25 bp)
AGAATATTGACCTGACCCCATTGAA
LOC_Os09g04790
Os.11810.2.S1_a_at--924--5511Chr09:2551308..2551332 (25 bp)
GAAAATGCAGCATCCTCAGTTGCTA
LOC_Os09g04790
Os.11810.2.S1_a_at--976--1231Chr09:2551325..2551349 (25 bp)
AGTTGCTAGAACCATCTCTGGTCAA
LOC_Os09g04790
Os.11810.2.S1_a_at--684--3771Chr09:2551340..2551364 (25 bp)
CTCTGGTCAACCTCCACTAAAGATA
LOC_Os09g04790
Os.11810.2.S1_a_at--596--10831Chr09:2551594..2551618 (25 bp)
TTGTGTTTGTATAGTTCGGGCGTTT
LOC_Os09g04790
Os.11810.2.S1_a_at--730--9551Chr09:2551653..2551677 (25 bp)
TCTTTGATGTCCCTGAGCACCTGAG
LOC_Os09g04790
Os.11810.2.S1_a_at--1036--5931Chr09:2551667..2551691 (25 bp)
GAGCACCTGAGCTGCTATACTAGTA
LOC_Os09g04790
Target Sequence 
AACTTCAGTGTCTACCAATGCCAAATTTGAAGTTCGAAGTCCCAAACGTGTACAGATCAAATTTGATGAAGGCATTATCG
GCACTCCACAATTGACTGATTCTATTGTACTACCTGAGAAGTTTGAGTTATTTGGGCAGAATATTGACCTGACCCCATTG
AAGGGCATATTTTCATCAATTGAAAATGCAGCATCCTCAGTTGCTAGAACCATCTCTGGTCAACCTCCACTAAAGATACC
AATTAGGACTGACAATGCTGAGTCTTGGTTGCTCACAACCTACCTTGATGATGAGCTTAGAATCTCCAGAGGTGATGGCA
GCAGCATCTTTGTACTGTTTAAGGAAGGAAGCACCCTCCTATATTAAGCTTGGCATGCCTAATCTAGGGTAGAACTTGAT
GCTGAAGCAACTCCAAGCAGTACTTGTGGCTAAATTATTTTTCATATTTAAGTTGGTGTGTTGTTATTTGTGTTTGTATA
GTTCGGGCGTTTGGATTATGTGAAGTTTTGTGTATGTGTAATGTATTCTTTGATGTCCCTGAGCACCTGAGCTGCTATAC
TAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11810.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis